UFO02474.5prime Sequence
1147 bp (943 high quality bases) assembled on 2008-12-21
> UFO02474.5prime
CAGTCGACATGAACAGCCTAAGGACAGCAACCATGCGATTTGCCGCTCTG
GCCAGCTCCAGTGCCGGATCTCTCGGCAAGCGCGATTTCACCCGCAGCCT
GTGGCACATGACCAAAAAGCCGGTGACAGCCGGAGGATCCGATCATGTAA
CCGTGTTGAATCTCCACAAGCCCAGCATTAATTGCACGTGCGGCTGCAAC
GTGCACACCAAATGTGAGCGGGAACTGGTGGAGTTCCTCACCGAGGAGAT
AGTGGCCGAGCGCAAGGTTCAAAAGGGCAAGACGGTGCCAAGCACCCTGG
ATGGATTCGCCGTAAAACTGACCGGCGCCGATGTGGAGCTCACCAAGCAG
ACGGATAAGGAAAAGGTGGTGGTCAGCTTCAATGTGAACCATACGGTGGA
CAGCGAGGAGGAGCCCGAAATCAACCCCAATGCTGACAAGCCGGATCTCG
GTGAAATGAGAAGCAAGCCCCAGTTCGAGGTGGACATCATAAAGGGCAAC
TCTACGCTGTCCTTTACCTGCAGCTTCCTTCAAGGCGAAGCTCAGGAGGG
CGAGTACAACGATGTCTTCTCCATTGATGAAATGGCCATCTTCGAGGGCG
AGTGGAACGATAAGGTCTACGCCGTCGCAGGCGACGTGCTTGACGGTTAC
TTGTACGACTTGCTGATCAACTTGCTGGAGGAGAAGGGCATCAGTCAGGG
AGTTTGCCGAAAAACTGTCGGACCTAGCCCACTGCCCATGAGCACACTTC
CTACATTGGTCTGCTGGAAAAGCTCTCCAAATTTCACTGCCGGTGGCAGG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGCCCAGGTTAGTGTCATAT
CATAATCATAATCATAATCATAATCACAACTAGCCTAGGAATTCCCTGGT
TCATGACTAGTGCTTTGATTCTCCACCAATAAAAAAACGCCCGGCGGCAA
CCGAGCGTTCTGGACCAAATCACGAATGGAGTTCTGAGGTCAATACTGGG
ATCTATCAACAAGGAGTCCAAGCGAGCTCGAAATTCAAATTACGCCCCCC
GCCCTGCCACTCTATCGCGAGTACTGTGGTAATTTAATAAGCATTTCTGG
CCGACATGGAAGCAATCCAAAACGGCATGAATGAACCCTGAATTCGC
UFO02474.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P32-RA | 1154 | CG6459-RA | 107..893 | 9..798 | 3875 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17671865..17672209 | 558..214 | 1725 | 100 | Minus |
| 2R | 25286936 | 2R | 17671570..17671806 | 798..559 | 1050 | 98.8 | Minus |
| 2R | 25286936 | 2R | 17672328..17672534 | 215..9 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:09 has no hits.
UFO02474.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:25:20 Download gff for
UFO02474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6459-RA | 102..888 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:14 Download gff for
UFO02474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P32-RA | 107..893 | 9..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:39 Download gff for
UFO02474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P32-RA | 107..893 | 9..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:39 Download gff for
UFO02474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17672330..17672534 | 9..213 | 100 | | Minus |
| 2R | 17671570..17671806 | 559..798 | 98 | <- | Minus |
| 2R | 17671865..17672209 | 214..558 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:14 Download gff for
UFO02474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13559075..13559311 | 559..798 | 98 | <- | Minus |
| arm_2R | 13559370..13559714 | 214..558 | 100 | <- | Minus |
| arm_2R | 13559835..13560039 | 9..213 | 100 | | Minus |
