UFO02475.5prime Sequence
1073 bp (791 high quality bases) assembled on 2008-12-21
> UFO02475.5prime
CAGTCGACATGGAGCCGTTTACCCATAATGATGGCAATCGCGACGAACTA
ATAATTCAGCAGAAACGGGATATTGAAAAAGAGATCAGCGACACAACTCC
CTTGGTCAGCGAGCAGTTGCCACTCACCTGCTTGTATGCGGAATACAGTG
GCGACGAGATCTTCACCGCCAAGATCCAGGATCTGTCCAAAAAGTACAAG
TTCATTCGCCGCACCCGCCCCGATGGCAATTGTTTCTTCCGAGCCTTCGC
CTACTCCTACTTGGAGTACTTGATCTCAAACACCAGTGCCTACCAGGAGT
TCAAAAAACTGGCCGAGGAGTCCAAGGAGAAGCTCGTTCAGCTGGGATTT
CCTAGTTTTACATTGGAGGACTTTCACGAAACGTTCATGGAAGTCATCCA
GCGCGTTAGCCCCGACAATGCAGGAGGACACAGCACGGTCCAAGATGAGT
TGCACAAGATCTTCAATGAGCAGGGTTACTCAGACTACGTGGTGGTTTAC
CTACGTTTGATCACCTCGGGAAAACTGCAGGAGGAGGCCGATTTTTACCA
ATATTTCATCGAAGGCGACCTCACCCATTGAGGCGTTCCGCCATCTGGAA
GTGGAGCCGATGTACAAGGAATCGGATCACATCCACATAATCGCTCTATG
CACCGCCCTCGGGCGCTGGAGTTCGTGTCGAGTACTTGGACCGTGGCGAA
GGTGGGACTGTGAAGGCCCACGATTTCCCCCGAGGGAAGCGAGCCCCGAA
TTTACCTGATATATCGAACAGGCCACTACGATATACTGTATCCAAATGCA
GCTTTCTAGAACCTTCGTTTGGGCGCGCGGCCCAGGTAATGGTCTAATCA
TATCCTAATCATAATCATATCACAACTAGCCTAGGAGATCCTGGTCTTGA
CTATTGTTGGATTCCTACAAATAAAAAACGCCCGGCGGCCATCGAATCGT
TCTGACAATTCCAAATGGAGTTTTGGAGGTCATACTGGAATCTATCAACA
GGAGTCCAAGCGAGTCTGAATCAATATACGCCCGTCTGCCTCATGCAGTA
TGGTTGAATTCTATAAGATTCGG
UFO02475.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4968-RA | 986 | CG4968-RA | 122..909 | 7..797 | 3850 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10307557..10307968 | 383..797 | 1895 | 98.8 | Plus |
| 2L | 23513712 | 2L | 10307192..10307493 | 82..383 | 1510 | 100 | Plus |
| 2L | 23513712 | 2L | 10307043..10307119 | 7..83 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:50:09 has no hits.
UFO02475.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:25:19 Download gff for
UFO02475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4968-RA | 134..934 | 1..804 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:14 Download gff for
UFO02475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4968-RA | 115..915 | 1..804 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:24 Download gff for
UFO02475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4968-RA | 115..915 | 1..804 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:24 Download gff for
UFO02475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10307036..10307119 | 1..83 | 95 | -> | Plus |
| 2L | 10307194..10307493 | 84..383 | 100 | -> | Plus |
| 2L | 10307558..10307974 | 384..804 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:14 Download gff for
UFO02475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10307036..10307119 | 1..83 | 95 | -> | Plus |
| arm_2L | 10307194..10307493 | 84..383 | 100 | -> | Plus |
| arm_2L | 10307558..10307974 | 384..804 | 97 | == | Plus |
