UFO02479.5prime Sequence
1087 bp (842 high quality bases) assembled on 2008-12-21
> UFO02479.5prime
CAGTCGACATGTATAACGTGGAATGCATTCCTATTAAGGACATAAAGCCG
GGTCTGAAGAACATCAATGTTATCTTTATTGTCCTGGAAGTGGGCGTGGC
CACCGTTACAAAAGAAAACCGCGAAGTGAGGAACTTCAAGGTGGGCGATC
CTACGGCCTGCATCAATGTTTCGATTTGGGACGAGCCGGGCAAACTGATA
GCACCCGGTGATATTGTCAGACTGACAAAGGGCTACGCCTCCATCTGGAG
GCATTGTCTGACCCTTTATTCCGGAAAGAACGGCGAGGTGTTCAAGATCG
GCGAGTACTGCATGGTCTTCAACGAGAGCGTCAATATGAGTGAACCGAAA
CGGGCGGAGCAGCAGGCGGTGGCAAATCCTGCTGCTACTCCGGCGGGACT
TCCGGCCGGTGGTGGTGCTCCTGGCTTGCCCGCTAAGGGTGGTGCCACGG
GCATTCCACAGCCCGCGGTGGCTGCTGCACCAGGTGCTCCCGCCACCCAG
AGCGCCGTGACCACAGCTCCTGCTGCGGCGCCAGCAATCGCACCCCAAAC
GACAACGAAACCTGGCACCCGTGGCGGCCGTGGAGGTGGAGGACGAGGTG
GCCTTAAGGGGGAACGGCGTGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCCACAGGAGTCAAGCGAGCTCGATATCA
AATTACGCCCGCCCTGCACCTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAACGGCATGATGAACCTGAATCGCA
GCGCATCAGCACCTGGCGCTTGCGTATAAATATTGGCCATGGTGAAACGG
GGGGCGAAAAGTGTCCATATTGGCCGTTATCAACTGGGAAACCTCCCCAG
GAATTGCTGAACAAAAACATTTCTCATTACCTTAGGG
UFO02479.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5181-RA | 1214 | CG5181-RA | 106..717 | 9..620 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7409030..7409512 | 620..138 | 2415 | 100 | Minus |
| 2L | 23513712 | 2L | 7409568..7409704 | 145..9 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:59 has no hits.
UFO02479.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:25:15 Download gff for
UFO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-RA | 67..690 | 1..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:01 Download gff for
UFO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-RA | 97..720 | 1..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:33 Download gff for
UFO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5181-RA | 97..720 | 1..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:33 Download gff for
UFO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7409026..7409509 | 141..624 | 99 | <- | Minus |
| 2L | 7409573..7409709 | 1..140 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:01 Download gff for
UFO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7409026..7409509 | 141..624 | 99 | <- | Minus |
| arm_2L | 7409573..7409709 | 1..140 | 97 | | Minus |
