UFO02487.5prime Sequence
1116 bp (990 high quality bases) assembled on 2008-12-21
> UFO02487.5prime
CAGTCGACATGGAAAGGCTGACCGGAAGGAATGTGGCACTACTGGTGCTG
TGCCTGTGCGCCGGATACGCCCTGGTGTTCGCCGAGGGCGAGAAGGAGAT
ACCGGTTACCAAATTCGGACAGAACATAGCGCCGACGATGACTTTCCTTT
ACTGCTACTCCTGCGGCTATCGCAAGGCGTTCGAGGACTACGTGGGCCTG
CTGGGCGAGAAGTATCCGCAAATTCAGGTGAATGGCGGCAACTACGATCC
GCCGGGTCTAAACTATTACCTCTCCAAGATGATATTCGCCCTGAAGATCA
TAATCATTGTGTCCGTGGTCAGTGCGGTCAGTCCGTTCACCTTCCTTGGC
CTGAACACGCCCAGTTGGTGGAGCCACATGCAGGCTAACAAGATATACGC
CTGCATGATGATCTTCTTCCTGGGCAACATGCTCGAGGCCCAGCTCATCT
CGTCCGGCGCTTTCGAGATAACACTAAACGATGTGCCTGTGTGGTCGAAA
CTGCAGACGGGACGCTTTCCCTCGCCGGAGGTACTCTTTCAAATCATCGA
CAACCATCTGCAGTTCACCGAAAAGGTGCAGGAGAATCCGGACTTTGTTA
AAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTGTAATCATTAAGCATTTCTGCGACTTGGA
AGCCATCACAAACGGCATGATGACTTGAATCGCAGCGGCATCAGCACCTT
GTCGCCTGCGTATATATTGCCCATGGTGAAACGGGGGCGAAAAGTGTCAT
ATGGGCCACGTTTAATCGAACTGGTGAACTCCACAGGATGCTGAAACGAA
ACTATCTCCATTACCTTAGGGAATGCAAGTTCACCGGTAACCGCCAATCT
GCCAATTATTGGTGAA
UFO02487.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3887-RC | 1130 | CG3887-RC | 269..862 | 9..602 | 2970 | 100 | Plus |
| CG3887-RB | 908 | CG3887-RB | 47..640 | 9..602 | 2970 | 100 | Plus |
| CG3887-RA | 960 | CG3887-RA | 99..692 | 9..602 | 2970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5011411..5011859 | 154..602 | 2245 | 100 | Plus |
| 2L | 23513712 | 2L | 5011190..5011335 | 9..154 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:17:06 has no hits.
UFO02487.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:25:10 Download gff for
UFO02487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3887-RA | 72..681 | 1..611 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:38 Download gff for
UFO02487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3887-RA | 93..702 | 1..611 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:48 Download gff for
UFO02487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3887-RA | 93..702 | 1..611 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:48 Download gff for
UFO02487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5011184..5011335 | 1..154 | 97 | -> | Plus |
| 2L | 5011412..5011869 | 155..611 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:38 Download gff for
UFO02487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5011184..5011335 | 1..154 | 97 | -> | Plus |
| arm_2L | 5011412..5011869 | 155..611 | 99 | == | Plus |
