UFO02488.5prime Sequence
1137 bp (933 high quality bases) assembled on 2008-12-21
> UFO02488.5prime
CAGTCGACATGGAGGAGGTCGAAATCAGCACAGAAAAGAAATCCAATCCC
GTAAAGTCATTTATTGCGGGCGGCGTGGGAGGCATGTGCAATGTGCTCGT
TGGCCATCCATTGGACACAATAAAGGTCCGTCTCCAAACCATGCCCACAC
CTCCACCTGGACAGCCGCCGAGATACAAGGGAGTCATAGATTGTGCCGCC
AGGACATTTCGTTATGAGGGTTTTCGCGGATTCTACAGAGGAATATCCGC
TCCACTTGTGGGAGTAACACCCATCTATGCCGTGGACTTTGCCGTCTATG
CGGCGGGTAAACGATTGTTCCAAACGGATGACCACATTAGGCTCACCTAC
CCACAAATCTTCGCCGCGGGAGCCTTGGCCGGAGTTTGTTCTGCCCTCGT
CACAGTGCCCACCGATCGTATAAAAGTCCTTCTGCAGACGCAAACCGTGT
CCAACGGACCTCTGCTCTACAATGGAACCATTGACACGGCCGCCAAGCTA
TATAGGCAGGGTGGCATTCGGAGCCTCTTCAAGGGAACATGCGCGTGCAT
TCTGAGAGACTCGCCCACCGGTTTTTACTTTGTGACCTACGAATTCCTAC
AGGAATTGGCTAGAAAGAAGTCCGCCCAATGGAAAGATTAGCACCACATC
AACTATTCTGTCCGGCGGAACGGCGGGCATTGTGTTTTGGACTTTGGCCG
TGCCGTTCGATGTACTTAAAAGCCGTCTCCAGTCGGCACCTGAGGGAACA
TACAAGCACGGCATTCCGCAGCGTTTTTAGAAACCTCATGGCCACAGAAT
GCCCAAAGCTCTATTTCGCGGTATCCTGCCAATTCTACTTCGTGCCTTTC
CCTCCACCGCAGCAGTTTTCTTCGGCGGGGAAGCTAAACAATGATTTGCT
GAAAGGCTGCAGCCTTTCTAGACCATTTCGTTTGCCCCGCGGGCCCAGGT
AAGTTGTTCATAATCAAATCATAATTCATAATCTAAATCACACTAGCTAA
GGAGAATCCTGGTCCATGAACTAGTGCTTGGATTTCTCACAATAAAAAAC
GCCCGGCGCCAACCGAGCGTTCCTGAACAATCTCAGATGGAGTTCTGTGA
GTCTTTACTCTGGAATCATTACACAGGAGTCTCAGGC
UFO02488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3476-RA | 1245 | CG3476-RA | 286..1178 | 9..903 | 4335 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7027986..7028420 | 124..558 | 2175 | 100 | Plus |
| 2L | 23513712 | 2L | 7028488..7028666 | 557..736 | 850 | 99.4 | Plus |
| 2L | 23513712 | 2L | 7028726..7028892 | 736..903 | 650 | 96.4 | Plus |
| 2L | 23513712 | 2L | 7027811..7027929 | 9..127 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:16:34 has no hits.
UFO02488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:25:09 Download gff for
UFO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3476-RA | 213..1114 | 1..908 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:15 Download gff for
UFO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3476-RA | 281..1182 | 1..908 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:43 Download gff for
UFO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3476-RA | 281..1182 | 1..908 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:43 Download gff for
UFO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7028727..7028896 | 737..908 | 95 | == | Plus |
| 2L | 7027806..7027927 | 1..125 | 97 | -> | Plus |
| 2L | 7027988..7028420 | 126..558 | 100 | -> | Plus |
| 2L | 7028490..7028666 | 559..736 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:15 Download gff for
UFO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7028490..7028666 | 559..736 | 99 | -> | Plus |
| arm_2L | 7027806..7027927 | 1..125 | 97 | -> | Plus |
| arm_2L | 7027988..7028420 | 126..558 | 100 | -> | Plus |
| arm_2L | 7028727..7028896 | 737..908 | 95 | == | Plus |
