UFO02491.5prime Sequence
1092 bp (932 high quality bases) assembled on 2008-12-21
> UFO02491.5prime
CAGTCGACATGATTGAAATGAACAAAACTGCAATCGGCATTGCAGCGGGA
GTAGCTGGAACTCTGTTTATTGGATACTGCATCTACTTCGACAAGAAGCG
CCGCAGCGATCCCGAGTACAAGAAGAAAGTCCGTGAGCGTCGCCGTCGCA
ACAAGAAAACCGGCACTGCCAAGTCTGGAGTTCCCAATCTGAACGACCAT
GAAGCCATCGAAAGATATTTCCTTCAAGAAATCCAGCTGGGCGAGACCCT
GATCGCCCGCGGAGATTTCGAGAGTGGCGTGGAGCACTTGGCGAATGCCA
TCGTCGTGTGTGGCCAGCCGGCTCGTCTGCTGCAGGTGCTGCAATCCTCC
CTTCCAGCTCAAGTATTCGCGATGCTGATCGTCAAGATGCAGGAGTTCGG
CAATCGAGCGGCCGAGGGCAACGACGGGCCAATCGTTTTGGGGCAGAGCT
CGGAGCAACAACTGGACGGAGCCAAAATTATAGAGTGTTCATCTGGAAAC
GCAAGTATCGACGACCTCGAAGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCCAGCGAGCTCGAT
ATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCAT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCTTGCGTATAATATTTTGCCCATG
GTTAAAACGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAC
TGGTGACCTCACCCAGGGATTGCTGAAACGAAAACTATCTCAAATAACCG
TTAAGGAATAAGCCAGCTTACCGTAACACGCACATCTGCAATATATGGTA
GAAACTGCGAAATGCTCTGAATCACTCAAAACGATAAAACGT
UFO02491.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tom20-RB | 1008 | CG7654-RB | 206..718 | 9..521 | 2565 | 100 | Plus |
Tom20-RA | 743 | CG7654-RA | 80..592 | 9..521 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20001848..20002156 | 213..521 | 1545 | 100 | Plus |
3L | 28110227 | 3L | 20001167..20001298 | 9..140 | 660 | 100 | Plus |
3L | 28110227 | 3L | 20001361..20001436 | 139..214 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:56 has no hits.
UFO02491.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:25:05 Download gff for
UFO02491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 72..591 | 1..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:57 Download gff for
UFO02491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 73..592 | 1..521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:00 Download gff for
UFO02491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tom20-RA | 73..592 | 1..521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:00 Download gff for
UFO02491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20001160..20001296 | 1..138 | 97 | -> | Plus |
3L | 20001361..20001436 | 139..214 | 100 | -> | Plus |
3L | 20001850..20002156 | 215..521 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:57 Download gff for
UFO02491.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19994260..19994396 | 1..138 | 97 | -> | Plus |
arm_3L | 19994461..19994536 | 139..214 | 100 | -> | Plus |
arm_3L | 19994950..19995256 | 215..521 | 100 | == | Plus |