UFO02492.5prime Sequence
1035 bp (905 high quality bases) assembled on 2008-12-21
> UFO02492.5prime
CAGTCGACATCGGCCAAAATGTACGGAAAGGGTAAGACTGCTATCGAGTC
GGAGGAGCTGCAGAAGCGACGCTGGCAGATCGAGCTGGAGTTCGTGCAGT
GCCTGTCGAACCCCAACTATCTAAACTTCCTTGCACAGCGTGGATTTTTC
AAGGACCAGTCGTTCATCAACTACCTGAAGTATCTGCAGTACTGGAAGGA
GCCGGACTATGCGAAATACCTCATGTACCCAATGTGCCTCTACTTCCTCG
ATCTGCTGCAGTACGAACACTTCCGCCGGGAGATCGTCAACTCGCAGTGC
TGCAAGTTCATAGACGACCAGGCCATTCTGCAGTGGCAGCACTACACTCG
CAAGCGCATCAAACTGATCGAAAACGTTACGGCCGCCCAGCAGCAACAAC
AGCAGCTTCAGCAGCAACAACAGCAGGCGAACGGCATGGAGGCAGCAACG
GGAGGCGAATCAGCAGCACCTACCCCCAACGTGAACGGGTCAGCTTCCAC
GGCGGATAGTCAACAGACGTCTTCTGCCCTACAGCCTGTCCAAGCACAGC
CTGGAAATCCCCAGCAGCAGCAGCAAATCAATGGCGTGGCATCGGGGGCC
AACATAAAACTAGAGTTAAACGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGTTCATGACTAGTGCTTGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
CTGAGTCATTACTGGATCTATCAACAGAGTCCAAGCGAGCTCGATATCAA
TTACGGCCCGCCCTGCACTCATCGCAGTACTGTTGTATTCATAGCATTCT
GCGACTGAGCATCCAACGGCATGATGACCTGATCGCCACGCATCAGACCT
GCGCTTGCTATATATTTGCCCATGTGAAACGGGCAGATGTCATATTGCAC
GTTATCAACTGTACTCACCAGGATGGCTGAACGAA
UFO02492.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED31-RC | 818 | CG1057-RC | 161..770 | 12..621 | 3050 | 100 | Plus |
| MED31-RB | 823 | CG1057-RB | 166..775 | 12..621 | 3050 | 100 | Plus |
| MED31-RA | 1098 | CG1057-RA | 441..1050 | 12..621 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4642751..4643244 | 128..621 | 2470 | 100 | Plus |
| 3R | 32079331 | 3R | 4642569..4642658 | 38..127 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:03 has no hits.
UFO02492.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-12-21 15:25:03 Download gff for
UFO02492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED31-RA | 419..1043 | 1..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:53 Download gff for
UFO02492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED31-RA | 430..1054 | 1..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:34 Download gff for
UFO02492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED31-RA | 430..1054 | 1..627 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:34 Download gff for
UFO02492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4642569..4642658 | 38..127 | 100 | -> | Plus |
| 3R | 4642751..4643248 | 128..627 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:53 Download gff for
UFO02492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 468291..468380 | 38..127 | 100 | -> | Plus |
| arm_3R | 468473..468970 | 128..627 | 99 | == | Plus |
