UFO02493.5prime Sequence
1044 bp (940 high quality bases) assembled on 2010-09-10
> UFO02493.5prime
CAGTCGACATGGCGGGCAATTTTTGGCAGAGTTCGCACTCGCAGCAGTGG
ATTTTGGACAAACCCGATCTGCTCCGGGAGCGTCAGCACGATTTGTTGGC
CCTTAACGAGGATGAATACCAAAAGGTGTTTATTTTCTTCGCAAATGTGA
TCCAGGTGCTCGGCGAGCAGCTAAAGCTGAGGCAACAGGTCATCGCCACG
GCGACGGTTTACTTCAAGAGATTCTATGCGAGGAACTCCCTGAAGAACAT
CGATCCTCTGCTGCTGGCGCCCACTTGCATCTTGCTGGCCTCGAAGGTGG
AGGAGTTCGGTGTCATTTCCAATTCACGACTGATCTCGATCTGCCAGTCG
GCCATTAAGACAAAGTTCAGCTATGCGTACGCTCAGGAGTTTCCCTACCG
CACCAATCACATCCTGGAGTGCGAGTTTTACCTGCTGGAGAACCTGGATT
GCTGCTTGATTGTCTACCAGCCGTACAGACCGCTGCTGCAGCTGGTTCAG
GACATGGGCCAGGAGGACCAGTTGCTCACCCTGAGCTGGCGTATCGTAAA
CGATTCCCTGCGCACCGATGTCTGCCTGCTCTATCCTCCTTACCAGATCG
CTATAGCCTGCCTTCAAATCGCCTGCGTCATCCTGCAAAAGGACGCCACG
AAGCAGTGGTTCGCAGAATTGAATGTTGATTTAGACAAAGGTCCAGGAGA
TCGTGCGCGCCATTGTAAATCTGTACGAGTTGTGGAAGGACTGGAAGGAA
AAGGACGAGATTCAGATGCTGCTGTCCAAGATTCCGAAACCGAAACCACC
GCCTCAGCGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATATCATAATCATATCACACTAGCCTAGG
AGATCCTGTCATGACTAGTGCTGATTCCTCACATAAAAACGCCCGCGCAC
GAGCGTTCTGAACAATCCGATGGAGTTCTGAGTCATACTGAATCTATCAC
AGGAGTCAGCGAGCTCGAAACAATACGCCCCGCCTGCCTCATCG
UFO02493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycC-RA | 1142 | CG7281-RA | 145..949 | 5..810 | 3990 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14889470..14890061 | 596..5 | 2945 | 99.8 | Minus |
| 3R | 32079331 | 3R | 14889197..14889411 | 810..595 | 1030 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:27:04 has no hits.
UFO02493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-17 09:58:51 Download gff for
UFO02493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycC-RA | 126..948 | 1..818 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:32:46 Download gff for
UFO02493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycC-RA | 126..948 | 1..818 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:51 Download gff for
UFO02493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycC-RA | 138..960 | 1..818 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:51 Download gff for
UFO02493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14889186..14889409 | 597..818 | 97 | <- | Minus |
| 3R | 14889470..14890062 | 1..596 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:32:46 Download gff for
UFO02493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10714908..10715131 | 597..818 | 97 | <- | Minus |
| arm_3R | 10715192..10715784 | 1..596 | 99 | | Minus |
