UFO02505.5prime Sequence
1092 bp (970 high quality bases) assembled on 2009-01-14
> UFO02505.5prime
CAGTCGACATGGCAATTATTATGACTGAATCGAGTTACGAAAGGCGCGTA
AAGGCTTTGTACGAAAAACAAATTCACATGGAAGCCCTCGAGGCGAAATT
CATCAAAAAGGTCTTTAAATTCAACAGCAATTTGTTGGATGTCAAGGAAG
CAGCTTCGCGCCATCAGCGGAAAGTGGGAAAGTTGCAAAAAGTGCTCATG
GAGCGGCGGGAGGAGTTGGACAAGCGAGTTTCCTTCATAGAGGAACTTGA
TCGAGAACTGGAGGCCACCAAACTTCACAATTTGGCCATGAAAGATTGGT
TTAAACAGCAGAAAATGCTGGCCAAACAGCGCAAAAACGAAATCATGGAA
AGCATTCACACGCTGTCGAAGACAACAAGAACCTATATAAATCAAGAAGC
GCTGCCGGCACGTGTGAAGGGTGTCACTGTACTCCGTGGCGATAAACGCG
ACCAGTTGATACCCTTTGATCTGAAGGCGACCGATGTGGAAGGACTGGAC
TCACTGTGTCAGCATCTCGAGAGTCTAAATGTGGACGTGGCGCAGTGGCA
GCAGCTTATCTCGCTGGCCATGGACATGGCTATGGAGTCACGTGCTCCCA
CTACTCCGCCCAAGGAAGCAGACAATTGCAAGTCTATAATCGAGATTGAT
CTCACATCGCCGATGAGCCACACCGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCGTCCTGCACTCATCGCAGTACTGTTGTATCATAA
GCATCTGCGACATGAAGCATCACAAACGCATGATGACTGATCGCAGGCGG
CATCAGCACTTGTCGCTGGCTTATAATATTTGCCCATGTGAAACGGGGGC
GAGAGTTGTCGATTGCCGGTTATCAACTGTGACTCACAGGAT
UFO02505.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spc25-RA | 968 | CG7242-RA | 92..757 | 9..674 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12962715..12963038 | 351..674 | 1620 | 100 | Plus |
| 3R | 32079331 | 3R | 12962026..12962242 | 136..352 | 1085 | 100 | Plus |
| 3R | 32079331 | 3R | 12961836..12961962 | 9..135 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:47 has no hits.
UFO02505.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:44 Download gff for
UFO02505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spc25-RA | 85..756 | 9..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:53 Download gff for
UFO02505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spc25-RA | 92..763 | 9..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:46 Download gff for
UFO02505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spc25-RA | 92..763 | 9..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:46 Download gff for
UFO02505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12961836..12961962 | 9..135 | 100 | -> | Plus |
| 3R | 12962026..12962242 | 136..352 | 100 | -> | Plus |
| 3R | 12962717..12963044 | 353..682 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:53 Download gff for
UFO02505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8787558..8787684 | 9..135 | 100 | -> | Plus |
| arm_3R | 8787748..8787964 | 136..352 | 100 | -> | Plus |
| arm_3R | 8788439..8788766 | 353..682 | 98 | == | Plus |
