UFO02506.5prime Sequence
1028 bp (918 high quality bases) assembled on 2009-01-14
> UFO02506.5prime
CAGTCGACATGTTCAAAAAATTCGAAGAGAAGGACAGCATTTCCAGCATT
CAGCAGCTGAAGTCGTCTGTGCAGAAGGGCATACGTGCCAAGTTGCTGGA
GGCCTATCCCAAGTTGGAGAGTCACATCGACCTGATCCTGCCCAAGAAGG
ACTCGTACCGCATCGCCAAGTGCCATGACCACATCGAACTGCTGCTAAAC
GGAGCCGGCGACCAGGTGTTCTTTCGCCACCGCGATGGCCCCTGGATGCC
TACCCTGCGCCTCCTGCACAAGTTCCCCTACTTCGTGACCATGCAGCAAG
TGGACAAAGGCGCCATCCGCTTCGTCCTGAGCGGAGCGAACGTCATGTGT
CCCGGCCTCACATCGCCAGGCGCCTGTATGACGCCGGCCGACAAGGACAC
CGTGGTGGCCATCATGGCTGAGGGCAAGGAGCACGCCCTGGCCGTTGGAC
TCCTCACGTTATCCACACAGGAAATTCTGGCGAAGAACAAAGGCATCGGT
ATCGAGACGTACCACTTCCTCAACGACGGCCTGTGGAAGTCGAAGCCCGT
GAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCGCCC
TGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATG
GAGCATCACAAACGCATGATGACTGATCGCAGCGCATCAGCACTTGTCGC
TGCGTTAATATTGCCCATGTGAACGGGGCGAGAGTGTCATATGCCACGTT
ATCAACTGTGACACCAAGATGCTGAAACGAAAAACTTTCTCATACGTAAG
AATGGCAAGTTTCACGGTAACGGCATCT
UFO02506.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5941-RB | 798 | CG5941-RB | 78..623 | 9..554 | 2730 | 100 | Plus |
| CG5941-RA | 1245 | CG5941-RA | 78..623 | 9..554 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6038262..6038565 | 172..475 | 1520 | 100 | Plus |
| X | 23542271 | X | 6038041..6038193 | 20..172 | 765 | 100 | Plus |
| X | 23542271 | X | 6038876..6038954 | 476..554 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:28 has no hits.
UFO02506.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:42 Download gff for
UFO02506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5941-RA | 77..635 | 1..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:10 Download gff for
UFO02506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5941-RA | 86..644 | 1..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:49 Download gff for
UFO02506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5941-RA | 70..628 | 1..560 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:49 Download gff for
UFO02506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6038263..6038565 | 173..475 | 100 | -> | Plus |
| X | 6038876..6038959 | 476..560 | 96 | == | Plus |
| X | 6038041..6038193 | 20..172 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:10 Download gff for
UFO02506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5932074..5932226 | 20..172 | 100 | -> | Plus |
| arm_X | 5932296..5932598 | 173..475 | 100 | -> | Plus |
| arm_X | 5932909..5932992 | 476..560 | 96 | == | Plus |
