UFO02508.5prime Sequence
1029 bp (923 high quality bases) assembled on 2009-01-14
> UFO02508.5prime
CAGTCGACATGTCGCTTATAAAGAATTTGGTAAAAGAGCCCGAACAGAAG
GCAAAGAAAAAGAAAAAGAATGCGGGATCTGGAGAAAGCGATTCCGATGA
GAAGGACAAGCCTCTGCGGCCGTTCATCAAAACCGCGACAGATCTACAGA
GGCTGAAGCTGGAGAAGCTCATGAAGAATCCGGATAAGCCCGTGGTCATA
CCGGAGCAGCGTCGCGAACGGGACTTCATGTCCTCGGTGCCCACGTTCGT
GCGGAATGTGATGGGAAGCAGTGCTGGAGCGGGTTCCGGCGAGTTCCATG
TGTACCGCCACTTGCGACGCAAGGAGTACGCCCGCCAGAAGAACATCCAG
AACCAGAGTGCCCGCGAAGCAGCAGATGAAGCTTACCAGCAGAAGTTGGA
CGACAACAGACGCGCGGCCGAAGAAAAGACTGCTAAGAAACGAGCCAAAC
GGTTGAAGAGAAAACAGAGGGCGAAAAAGCCGAGAGAGGACAAGAAGCCA
CTGGCTAAGGAAGCCTCAGAGGATAGTAACACAGATTCCGAGGAAGAGCC
CACAGAAGAAAAGGCAGAAAGTAGCCCTGAGGAAGGACAACAGGTGGCAT
CCAAGGAATCCGACGACAATAACACCCAAGAAACTTCGAATGAAGAGGCA
GTGAATTCAAATACAGAAGCGAAAAGCGCAGAGGACACAAATGCAGTGGA
ATTAGATAGCACCGAAGCTACAAAGGAATCCCAAAATGTGGATCAAGAAC
AGACAAGCCTGTGCCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATATCATAATCATATCATATCATATCACACTAGCC
TAGAGATCCTGGTCATGACTAGTGCTTGATTCTCACATAAAAACGCCGGC
GGCACGAGCGTCTGACATCAGATGAGTTCTGAGTCATTACTGATCTATCA
CAGAGTCAGCGAGCTCGATATCATACCCCCGCTGCACTCATCCAGTATTG
TTGTATTCTATAGCATTCGCGCACTGAAG
UFO02508.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8441-RB | 938 | CG8441-RB | 133..893 | 7..766 | 3780 | 99.9 | Plus |
| CG8441-RA | 841 | CG8441-RA | 36..796 | 7..766 | 3780 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16185167..16185752 | 766..182 | 2880 | 99.8 | Minus |
| 2R | 25286936 | 2R | 16185811..16185987 | 183..7 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:27:10 has no hits.
UFO02508.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:40 Download gff for
UFO02508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 8..775 | 1..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:57 Download gff for
UFO02508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 29..796 | 1..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:06 Download gff for
UFO02508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8441-RA | 29..796 | 1..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:06 Download gff for
UFO02508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16185167..16185751 | 183..766 | 99 | <- | Minus |
| 2R | 16185812..16185990 | 1..182 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:57 Download gff for
UFO02508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12072672..12073256 | 183..766 | 99 | <- | Minus |
| arm_2R | 12073317..12073495 | 1..182 | 97 | | Minus |
