UFO02511.5prime Sequence
721 bp (543 high quality bases) assembled on 2009-01-14
> UFO02511.5prime
CAGTCGACATGAGCTCTCTTGTTGATACCGGTCACTCGGATATCGATGAC
AATGACTCCTTCCGCTCGTTCGACCAAAGCGAAGATATCATGGACAACCT
TATCCTCTCGCTCTCGGAGAGCGACTGCGACAGCGCCGCGGACTTTGATT
CCGGCTCGGCGGATGAGATTTCCATGGAAAAAAAAATGGTTGGTGCACCC
GCCCAGCTGGGCCAGGGCGCAGGAAATACTTTGAAGCCCACGCCTTCCGA
CGTCTTCGTAAAGCCAAAGTCGCCCGTTTTGGAGGTCCATTCCAGCGACT
CATCCACCTGCGATGGCGTCTCCGCTGGCAAGCCCACACAGGTTGCGGGC
TGTTTCAAGTCTCCCAAGAAGTTTACCGTTTCGCCGATCAGTGAGCAGAA
GCAGAGACCAGTGCCCTTGTGTCCCAGAGATGTTCCGGGACTTTCCTCGA
GCCAGATACCATGCATAAAACACTTTGACCTTGACCACTCAGTAACAGTC
CGAATAGAGCACCTGATCTCGATCCCGAAACGGAGGCCTTACAAAACACG
CCTTCACCGAAATTTGGATCGATTCGCAGCAAAACCTTGCCAAGCCAAGG
TTTCTTCGCTTGCAGCAGTTTACTATGGTCCTGAGGCCTATTTTGACCAG
ATTCTGACTAGAAGATCGGAGTCAGCAAAACATCACGCCTGCTCCGAAAG
TGACAACCCGTGGGAGAAGGT
UFO02511.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5194-RA | 1113 | CG5194-RA | 78..799 | 9..721 | 3155 | 96.8 | Plus |
| CG5194-RB | 1095 | CG5194-RB | 78..781 | 9..721 | 2875 | 94.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9009050..9009530 | 664..188 | 2020 | 97.5 | Minus |
| 3L | 28110227 | 3L | 9009581..9009761 | 189..9 | 860 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:05:54 has no hits.
UFO02511.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:50 Download gff for
UFO02511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5194-RA | 84..812 | 1..721 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:19 Download gff for
UFO02511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5194-RA | 71..799 | 1..721 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:35 Download gff for
UFO02511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5194-RA | 71..799 | 1..721 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:35 Download gff for
UFO02511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9009032..9009529 | 189..680 | 96 | <- | Minus |
| 3L | 9009582..9009768 | 1..188 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:19 Download gff for
UFO02511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9002132..9002629 | 189..680 | 96 | <- | Minus |
| arm_3L | 9002682..9002868 | 1..188 | 96 | | Minus |
