UFO02513.5prime Sequence
961 bp (824 high quality bases) assembled on 2009-01-14
> UFO02513.5prime
CAGTCGACATGTCAGCGGTGCCGATGAAAGCCTTTCTGGCTGGTCTCTTC
TTGCTGGCCAATGCCTGGCACATCACAGCCATAAATGAGCAGCACCAGAA
GCATCACCTGCAGTGCTGGCACTGTAGCTCGGACACAATTGGGGCGGAGG
ACTTCTGCGACGTGACCTTCCAGGAGGACAACATTCCCACTGACCTGATC
AAGGAGCGGAATATAAATCTGCTAAGGAGCTGCAACGGCACCATTAACTC
CGATCACGAGAGGGCCGTTTGCCGCAAGACCGTGGAGGAAAATAATGGCA
AGCTGATCACCAAGCGATTCTGCTACTACACCAACAAATCAGATCCCGTG
GAGCTGTGCAACATCACCAGTCCGGAGAAGAACGTGCGGCGGATATTCTG
CGAGGACTGCCTCACCGATCGCTGCAACGGAGCCTTAGCAGGTGCATCCA
TTTTGGAGATGCTGCTGCTCCTGCCCATCGCGGGCCTCATCCAACAGTTT
GCCATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAG
TGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGG
CGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATTATCAAATTACGCCCC
GCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAGCATTCTGCCGACA
TGGAGCATCACAAACGGCATGATGACTGATCGCCAGCGCATCAGCACCTT
GTCGCTTGCGTATAATATTTGCCATGTGAAACGGGGCGAAGAAGTTGTCC
ATATGCCACGTTAATCAAACTGGTGAACTCACCAAGATGCTGAAACGAAA
CATATTCCATA
UFO02513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twit-RA | 1150 | CG9335-RA | 171..669 | 8..506 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20856140..20856356 | 75..291 | 1085 | 100 | Plus |
| 2L | 23513712 | 2L | 20856418..20856632 | 292..506 | 1075 | 100 | Plus |
| 2L | 23513712 | 2L | 20852748..20852818 | 8..78 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:09 has no hits.
UFO02513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:38 Download gff for
UFO02513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9335-RA | 164..671 | 1..512 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:29 Download gff for
UFO02513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twit-RA | 167..674 | 1..512 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:26 Download gff for
UFO02513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twit-RA | 167..674 | 1..512 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:26 Download gff for
UFO02513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20852744..20852818 | 1..78 | 94 | -> | Plus |
| 2L | 20856144..20856356 | 79..291 | 100 | -> | Plus |
| 2L | 20856418..20856637 | 292..512 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:29 Download gff for
UFO02513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20852744..20852818 | 1..78 | 94 | -> | Plus |
| arm_2L | 20856144..20856356 | 79..291 | 100 | -> | Plus |
| arm_2L | 20856418..20856637 | 292..512 | 99 | == | Plus |
