UFO02515.5prime Sequence
1067 bp (956 high quality bases) assembled on 2009-01-14
> UFO02515.5prime
CAGTCGACATGCCGGAAGAACCAGAGAAAACGGCGGACGACAAGCGCAGT
CACTTGCCGTGGATTGAGAAGTACCGCCCCGTGAAGTTCAAGGAGATAGT
GGGCAATGAGGATACCGTAGCAAGACTATCCGTATTCGCCACCCAGGGAA
ATGCACCCAATATTATTATTGCTGGTCCTCCTGGCGTGGGCAAGACAACC
ACCATCCAGTGTCTGGCCAGGATTCTCCTGGGAGACAGCTACAAGGAGGC
TGTCCTCGAGCTGAATGCCTCCAATGAACGAGGAATCGATGTGGTCCGCA
ACAAGATCAAGATGTTTGCTCAGCAGAAGGTGACACTGCCGCGGGGCAGG
CACAAGATTGTGATTCTGGACGAGGCGGACAGCATGACGGAGGGTGCCCA
GCAGGCACTGCGCCGGACCATGGAGATCTACAGCAGCACCACTCGTTTTG
CCCTGGCCTGCAACACCAGCGAGAAGATCATAGAGCCTATCCAGTCCCGC
TGCGCCATGCTACGATTCACCAAGCTGTCCGATGCGCAAGTTCTGGCCAA
GCTCATCGAGGTGGCCAAGTGGGAGAAGCTTAACTACACGGAGGACGGAC
TTGAGGCCATCGTATTCACTGCCCAAGGTGATATGCGACAGGGACTGAAC
AACCTGCAGTCCACCGCTCAGGGATTTGGCGACATCACCGCTGAGAACGT
CTTTAAAGTCTGCGACGAGCCGCACCCAAAGCTCCTAGAGGAGATGATCC
ACCATTGCGCTGCTAACGACATACACAAGGCCTACAAAATCCTGGCCAAG
CTGTGGAAGCTGGGATACTCGCCGGAGGACATCATTGCGAACATATTCCG
TGTCTGCAAGCGCATCACATCGATGAGCATTTGAGCTGGACTTTATCCGT
GAGATCGGATCACCCACATGAGATATCGATGGTATCACTCGCTGCTGCAG
CTCACCGCCTTCTGCAACTCTGCATGCCGCGAGAAGCATGCAGCTTTCTA
GAACATTCGTTGGGCGCGCGGGCAGTATGTCATATTAATCTAATCTAAAT
CCTATCCAACTAGCTAA
UFO02515.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC4-RA | 1127 | CG14999-RA | 56..1048 | 9..989 | 4660 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4134975..4135766 | 959..174 | 3650 | 98.9 | Minus |
| 3L | 28110227 | 3L | 4135818..4135983 | 174..9 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:11 has no hits.
UFO02515.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:36 Download gff for
UFO02515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC40-RA | 51..1039 | 1..980 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:03 Download gff for
UFO02515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC4-RA | 50..1038 | 1..980 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:38 Download gff for
UFO02515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC4-RA | 50..1038 | 1..980 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:38 Download gff for
UFO02515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4134975..4135766 | 174..959 | 99 | <- | Minus |
| 3L | 4135819..4135989 | 1..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:03 Download gff for
UFO02515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4134975..4135766 | 174..959 | 99 | <- | Minus |
| arm_3L | 4135819..4135989 | 1..173 | 97 | | Minus |
