UFO02517.5prime Sequence
1032 bp (930 high quality bases) assembled on 2009-01-14
> UFO02517.5prime
CAGTCGACATGTTTGGCGCCACACAATCGACGAACCGAATGAACGACTTC
GAGGTCGCCTCGCCGCCGGACGACTCCGTCTCGGCGCTGGAGTTCAGCCC
CAGCACGGTGCAGAAGAACTTCCTGGTGGCCGGAAGCTGGGACAGCACGG
TCCGCTGCTGGGAGGTGGAACAAAACGGGGCCACTGTGCCCAAGTCGATG
AAGACCATGGGCGGACCGGTGCTGGACGTTTGCTGGTCGGACGACGGCAG
CAAAGTGTTCGTCGCCTCCTGCGACAAGCAGGTGAAGCTCTGGGACCTCG
CCTCCGATCAAGTGATGCAAGTGGCGGCCCACGACGGTCCCGTTAAGACG
TGCCACATGGTCAAGGGACCCACGTACACCTGCCTCATGACCGGCTCCTG
GGACAAGACCCTAAAGTTCTGGGACACCCGTTCGCCCAATCCCATGATGA
CCATCAATCTACCCGAGCGGTGCTACTGCGCCGATGTGGAGTATCCGATG
GCCGTGGTGGGCACGGCCAACAGAGGACTCATCATATACTCGCTGCAGAA
TAGCCCAACCGAGTACAAGCGGCAGGAGAGTCCGCTGAAGTACCAGCACC
GTGCCATTTCCATTTTCCGGGACAAGAAAAAAGAGCCCACAGGCTGTGCG
CTGGGCAGCATTGAGGGCCGTGTGGCCATTCAGTATGTGAATCCGGGGAA
TCCAAAAGATAACTTCACCTTCAAGTGCCACCGTACTACGGGCACCTCAG
CTACCAGGATATTTATGCAGTAAATGACATCGCATTCCACCCTGTGCACG
GCACCCTGGTGACCGTTGGCTCAGATGGCACCTTCAGTTCTGGGACAAGG
ATGCCCGGACCAAGCTCAAGTCAGCGAGACATGATCAGTCATTACCAAAT
GCGATTACGCACGCAGAAATTGCGTACGCGTCGCTACGACTGTCGAGCCA
CGAGTACTCCACCGGCAGAAGCCCAATCTTTTCTGCCTCGTGCTACGACG
AGTCAAGCCGGCATAGTAGCTTCTAGACAATT
UFO02517.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rae1-RA | 1189 | CG9862-RA | 76..1104 | 9..1010 | 4475 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21659018..21659477 | 872..415 | 2200 | 99.6 | Minus |
| 2R | 25286936 | 2R | 21659525..21659932 | 416..9 | 2040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:26:55 has no hits.
UFO02517.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:34 Download gff for
UFO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 65..937 | 1..872 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:45 Download gff for
UFO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 69..941 | 1..872 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:57 Download gff for
UFO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rae1-RA | 69..941 | 1..872 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:57 Download gff for
UFO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21659018..21659475 | 417..872 | 99 | <- | Minus |
| 2R | 21659525..21659939 | 1..416 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:45 Download gff for
UFO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17546523..17546980 | 417..872 | 99 | <- | Minus |
| arm_2R | 17547030..17547444 | 1..416 | 99 | | Minus |
