UFO02518.5prime Sequence
894 bp (269 high quality bases) assembled on 2009-01-14
> UFO02518.5prime
CAATCCACATGCGCGCCTTCATCGTAATGTGCCTGGTGGCAGTCGCCTGC
GCCGATAAGCTCGGCTACAACTACCAGCCCGTGGGACACTCCAGCTCCGG
ACTGTCCTTTGCTCCTGGAAGTGGCAGCATTGGAGGTGGATCCATTGGAG
GTGGTTCGATTGGAGGAGGCTCCATTGGAGGAGGATCCATTGGAGGAGGC
CTCTTTGGTGGTGGCTCTATCGGAGGCGGTTCCATTGGAAGTGGTTCCCT
TGGTGGTTCCATCAGTGGTGGCTCTATTGATTCCGGTCTTGGCGGTCTTG
GTGGACTCGGTGGTCTAGGAGGTGGCGACGCTCTGGCCGCTCCAGTCTCC
TACAACGCCCCCGCTCCCGCTGCTGATCTCCAAAAGGAGTTCTTCACCTA
CTCCGCCAACGAGCAGGACTTCGATGAGCCACAAGAACTGGAGCGTGTTG
CTGGATCCGTAAACAAGGGACTGCGCGTTGTCTTCATCAGAGGACCCGAG
AACCGTGGTCTGGAGAACGCTGCCCTAGCCCTCGCCAAGCAGGCTGCACA
GCAGGAGACCGCCATCTATGTCCTGAACAGCAGGCCGATATAGGAGATCT
TGCCCAGAAACTGAACGCCATCCGCAACAACAATAACAACGAGCCCGAGG
TGCACTTCGTCTAGTACCGCACTCCCGAGGATGCTGCCAACGCCCAGCGC
GCCATCCAGTCGCAGTACGACCAATTGTGAGGATCCTCTCACGCCGACTA
CGGTGGTGTGGCACCCGCCCTGAACTTCGCCTCGCTGGTCTCGTCCAGAA
GCTAATGCTCAGATCCCTGAAACGCTTACCTGCCACTTCCATCTCTGCGT
CTATTGTGATGCTTGCTAGATCATACGTTGCACGCGGGCCCAGC
UFO02518.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlL-RA | 1002 | CG6447-RA | 51..891 | 9..844 | 3840 | 97.5 | Plus |
| TwdlL-RB | 1066 | CG6447-RB | 130..955 | 24..844 | 3765 | 97.5 | Plus |
| TwdlB-RA | 1025 | CG6478-RA | 48..883 | 9..839 | 3020 | 91.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26624698..26625523 | 844..24 | 3640 | 97.5 | Minus |
| 3R | 32079331 | 3R | 26622599..26623403 | 834..34 | 2880 | 91.7 | Minus |
| 3R | 32079331 | 3R | 26632323..26632769 | 338..783 | 1480 | 89.3 | Plus |
| 3R | 32079331 | 3R | 26619592..26620028 | 345..780 | 1265 | 86.5 | Plus |
| 3R | 32079331 | 3R | 26630214..26630617 | 378..780 | 920 | 82.4 | Plus |
| 3R | 32079331 | 3R | 26628052..26628452 | 783..384 | 860 | 81.5 | Minus |
| 3R | 32079331 | 3R | 26634091..26634494 | 378..780 | 740 | 79.5 | Plus |
| 3R | 32079331 | 3R | 26626167..26626448 | 736..456 | 685 | 83.7 | Minus |
| 3R | 32079331 | 3R | 26619262..26619435 | 27..200 | 600 | 89.7 | Plus |
| 3R | 32079331 | 3R | 26631931..26632040 | 9..118 | 385 | 90 | Plus |
| 3R | 32079331 | 3R | 26620812..26621009 | 724..528 | 310 | 78.3 | Minus |
| 3R | 32079331 | 3R | 26656956..26657049 | 483..576 | 245 | 84 | Plus |
| 3R | 32079331 | 3R | 26640530..26640724 | 534..727 | 235 | 75.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:52:33 has no hits.
UFO02518.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:33 Download gff for
UFO02518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RA | 51..902 | 9..857 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:47 Download gff for
UFO02518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RA | 51..902 | 9..857 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:42 Download gff for
UFO02518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlL-RA | 51..902 | 9..857 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:42 Download gff for
UFO02518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26624683..26625523 | 24..857 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:47 Download gff for
UFO02518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22450405..22451245 | 24..857 | 96 | <- | Minus |
