UFO02520.5prime Sequence
980 bp (856 high quality bases) assembled on 2009-01-14
> UFO02520.5prime
CAGTCGACATGAATACAATTCGTCCTTGCGGTTGTAAGGGCGTTCGCACC
TGCTTGAGCTGCGAACAGGACTTTCATATAGCGAAGACCTCGCTACGGGA
ACAATTCCAGCAACTGGAAGCATGGTCCTACTGTATCCAGTGCGACCTTC
TGCAGCGCGGTTGGGATACCAATCATGTCCAAAAGGATCATGAAAATCAC
AAAAAAGATGAGGGCCTCCCACTGCCGGGCATCCTGGTGCAGGAGGAATT
CCTTAGCGTTGATGAGGGCGCCCAACTTATAGCCGACTTGGATGACCTGC
CATGGGACATCTCGCAGAGCGGCAGGCGAAAACAGAACTTCGGACCCAAG
ACCAACTTTAAAAAGCGCAAACTGCGGCTGGGATCCTTTGCCGGATTCCC
CAGGACAACGGAATATGTGCAACGGCGCTTCGAAGACGTTCCCCTGCTTC
GTGGCTTTCAGACCATCGAACAGTGCTCCCTGGAGTACGAGCCCAGCAAA
GGAGCCAGCATAGATCCGCACGTGGACGATTGCTGGATCTGGGGCGAGCG
TGTGGTCACTGTCAACTGCCTCGGCGACTCAGTGCTCACTTTGACGCCCT
ACGAAGTTCAACAATCGGGCAAGTACAACTTGGACTTGGTTGCCAGCTAC
GAAGATGAACTATTGGCGCCTCTACTGACAGATGACCAACTTGCAACTTT
TGAGGGAAAGTGCTGCGCATACCTATGCCAAACCTCTCCTTGATAGTTTT
GTATGGGCCAGCGAGGTACCAGTTTGAGCATTCTGTACTACGCGAGGATG
TCCAAGAGCGCGCGTTTGTGTAGCTACGGGAGTTTACGCCCATGTACATC
ATGCGTAGAAATCAAAGGAGATCTGTCGAGAAAGTCTCAGATTTCTGCAA
TAACGCAGCTTCTAGACATCGTTGGCGGCGGCAAGTTATTGCTAATCTAA
TCTAATCTATCTATCACTAGCTAGGAATCT
UFO02520.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4036-RB | 950 | CG4036-RB | 22..923 | 9..897 | 4180 | 98.4 | Plus |
| CG4036-RA | 1002 | CG4036-RA | 74..975 | 9..897 | 4180 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9790970..9791694 | 9..732 | 3575 | 99.9 | Plus |
| 2L | 23513712 | 2L | 9789367..9789534 | 732..566 | 655 | 94 | Minus |
| 2L | 23513712 | 2L | 9791755..9791876 | 733..851 | 465 | 95.9 | Plus |
| 2L | 23513712 | 2L | 9789536..9789614 | 87..9 | 275 | 89.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:13:55 has no hits.
UFO02520.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:32 Download gff for
UFO02520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 15..928 | 1..903 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:38 Download gff for
UFO02520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 70..983 | 1..903 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:58 Download gff for
UFO02520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4036-RA | 70..983 | 1..903 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:58 Download gff for
UFO02520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9790966..9791694 | 1..732 | 99 | -> | Plus |
| 2L | 9791755..9791939 | 733..903 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:38 Download gff for
UFO02520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9790966..9791694 | 1..732 | 99 | -> | Plus |
| arm_2L | 9791755..9791939 | 733..903 | 91 | | Plus |
