UFO02522.5prime Sequence
841 bp (50 high quality bases) assembled on 2009-01-14
> UFO02522.5prime
CAATCCACATGCAGGTGGAACCAGCCGAAGTCGGCTGTGACGTCACGCAT
CGCCAGCATGAGAAAAACAAAACCAATGGGATTTTCTCAACGGCAGTCAG
AAGTAAAAAAAACGGGCAACCGAACGGACGGATCTACACCTCCACGCCGA
ATACCTCGCATCCGAAACTTGAGCACTACTTACGTGTTGCTAAACCCTCG
GAAAAGGGGCGAGTGGGAGTGGTGACCGCCCTCGATCCGCTGATCAGAAA
GGTGGCCCTTCTCTTTGGGACTCTTATCATTGGCTACAAAAGCGTCATCT
TAACGATGCCATACATCACGGGCGATTCCATCCAGGTGCTGAGCCACCAG
GTGCAGAGTAGGTGGAACGAGACCTTGGTGTGGGCCACCAGGCACCAGCT
GGGCTCCAGGCTGAGTCCCCTGCTGTGTGGCCTTCTAGTGACAGCTTTCG
CGTACGGAATCGTGTACTTGGACAGCGCGGTGCCCGGCGTAAATCCCCCC
TCGCCCTTTACGCCGCGTTCCAAGAAACGTTTCCGCGAGGAGAAGACTGC
CTCGATGCACTTGGGCTACTTGTGCGCCCTGTTCTGCGGATTTCTGGTCA
CGGTCTTCATGTACTTCGACTTGTACTCGGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGTGCCCAGGTAAGTGGTCATAATCATAATCAAATCATAAT
CATGATCACAACTAGCCTATGAGATCCTGTTCATGACTAGTGCTTGTATT
CTCACAATAAAAAAACGCCCGCCAGCAATCGAGCGTTCTGAACAAATCCA
GATGACGTTCTGAGCTCCTACTGAATCTATCACAGATCAAG
UFO02522.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8321-RA | 1195 | CG8321-RA | 190..810 | 9..629 | 3015 | 99 | Plus |
| CG8321-RB | 930 | CG8321-RB | 1..545 | 85..629 | 2650 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12034135..12034432 | 9..306 | 1415 | 98.3 | Plus |
| 2R | 25286936 | 2R | 12035488..12035710 | 307..529 | 1100 | 99.6 | Plus |
| 2R | 25286936 | 2R | 12035775..12035875 | 529..629 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:12:52 has no hits.
UFO02522.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:39 Download gff for
UFO02522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8321-RA | 181..808 | 1..629 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:22 Download gff for
UFO02522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8321-RA | 183..810 | 1..629 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:27 Download gff for
UFO02522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8321-RA | 183..810 | 1..629 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:27 Download gff for
UFO02522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12034128..12034432 | 1..306 | 97 | -> | Plus |
| 2R | 12035488..12035710 | 307..529 | 99 | -> | Plus |
| 2R | 12035776..12035875 | 530..629 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:22 Download gff for
UFO02522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7921633..7921937 | 1..306 | 97 | -> | Plus |
| arm_2R | 7922993..7923215 | 307..529 | 99 | -> | Plus |
| arm_2R | 7923281..7923380 | 530..629 | 100 | == | Plus |
