UFO02528.5prime Sequence
894 bp (778 high quality bases) assembled on 2009-01-14
> UFO02528.5prime
CAGTCGACATGCAGATTCTACAGAAGATCAAAAGCACCAAAAAGAAGTTC
GGCATGCGCAACTTGGCCACGGTTACCTATGAGGCACTGCAGTATCTGGA
GGAGTCGCCCTGCAAGACACAAACTCGTGAGAACATTATGAATTACGTTA
AAGACCTGTCTTCTTATCGTCTAAAGTCCCAAGAGATCCTGCAAATGATC
AACGATCCGCCTACAAGTGCACTACACACGCAACTGCTCATCGACGACAA
TAAAGCTCCACTAACCGATGAGGAGAACGAGAAAATCATTCAGCTGAGCT
ACAAACACTTCCATGGTGGAGAAACCAAAGGCGCTGCTAAGGAAACACCG
GCGGAAAAGCCTGCGGAGTCCACTGCGAAGGCCGGCAAGCAATCTGGCGT
AAAGCGTAATGCCCAGGCAAAATCCAATCCAGCGGAACAAATAGCTCCAG
CGGACAAAACCACGCCAGGTGATGGAGTTACTCCTGCGAATGTCGCTACT
CCTTCAAGTGAAGCCACTACTACTACTCCAGCAGAAGAAGCAAGCCCAGT
GGAAACATCGTCTTCAGAAAATAATGCTACTCCAGCAAATGAAGCCACTA
CAGCGCCTGCAACGGATGCACCCACTTCAATGGAAACCAAGTCCAATCCG
ACACCAGATGGAGAAACCTCGGGGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATATCATATCATATCA
CACTAGCCTAGGAGATCTGGTCATGACTAGTGCTGGATTCTCACATAAAA
CGCCCGGCGCAACGAGCGTCTGACATCGATGGAGTTCTGGAGGTCATACT
GGATCTATCAACGGAGTCAGCGAGCTCGATTCATACGCCCGCCT
UFO02528.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcp-RC | 1138 | CG4875-RC | 69..734 | 9..673 | 3305 | 99.8 | Plus |
| Rcp-RB | 1080 | CG4875-RB | 69..734 | 9..673 | 3305 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16885075..16885505 | 236..666 | 2155 | 100 | Plus |
| X | 23542271 | X | 16884862..16885016 | 82..236 | 775 | 100 | Plus |
| X | 23542271 | X | 16884726..16884801 | 9..84 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:38 has no hits.
UFO02528.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:33 Download gff for
UFO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4875-RB | 64..736 | 3..679 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:04 Download gff for
UFO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcp-RB | 66..738 | 3..679 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:20 Download gff for
UFO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcp-RB | 66..738 | 3..679 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:20 Download gff for
UFO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16884723..16884800 | 3..83 | 96 | -> | Plus |
| X | 16884864..16885016 | 84..236 | 100 | -> | Plus |
| X | 16885076..16885517 | 237..679 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:04 Download gff for
UFO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16778756..16778833 | 3..83 | 96 | -> | Plus |
| arm_X | 16778897..16779049 | 84..236 | 100 | -> | Plus |
| arm_X | 16779109..16779550 | 237..679 | 99 | == | Plus |
