UFO02529.5prime Sequence
1075 bp (963 high quality bases) assembled on 2009-01-14
> UFO02529.5prime
CAGTCGACATGTCGACTATAATTGAAACCGGCAAGTCAGATTTCATCAAG
GTGAATGTTTCCAACTCTCACAATGATGCAGTCGCCTTCGAGGTCAAGTT
AGCCAAGGATCTAACAGTTGCCCAGCTCAAGACCAAACTTGAGATACTGA
CGGGCGGATGTGCCGGTACCATGAAGGTGCAGGTCTTCAAGGGTGACACC
TGCGTGTCCACAATGGACAACAATGACGCCCAACTGGGTTACTATGCCAA
CAGTGATGGACTCCGGCTGCATGTCGTCGATAGCTTTGCTACCTTCTCGT
TCGACAGCGCTCCCGTTGAGAAATTCGAACTGTCCAAAGATCAGTACGAA
CAGCGAACAGATTCTGTGCGCAACTACCTCAAGATTAATCGCATGGGCAA
GTACAACGATGAGGAGATGCAACAGGCGGAGGAGAAGAAGCGCCTTCAGG
CGGAGGAGATCCAAAAACGGGCGGAACTTTGTGTACTGGGTGGCAGATGT
GAGGTTACGGTTCCAGGTAATCCAACACGACGAGGAACAATCCGATACAA
TGGTCCGCTCGAAGGGAAAAGTGGTCACTTTATTGGAGTGGAATACGACG
AACCACTGGGGAAAAATAATGGAAGTTTCGGTGGAAAGGCCTACTTTACG
TGTGCCCCAAATTACGGCGGCTTTGTATCACCATTATCCGTTACGGTTGG
TGACTTTCCGCCGGAAGACTTCAACATGGATGACGAGCTCGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACAATAAAACGCCCGGCGGCACGAGCGTTCTGACA
ATCCAGATGGAGTCTGAGTCATACTGGATCTATCACAGGAGTCAGCGAGC
TCGATATCAAATACCGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTTA
TTCATTAGGCATTCTGGCAGACTGAGCCATCAAAACGGCATGAATGAACC
TGAATCGCCACCGCACACGCACTTG
UFO02529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TBCB-RA | 1166 | CG11242-RA | 123..854 | 9..740 | 3660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19486167..19486542 | 505..130 | 1880 | 100 | Minus |
2R | 25286936 | 2R | 19485983..19486106 | 625..502 | 620 | 100 | Minus |
2R | 25286936 | 2R | 19486593..19486715 | 131..9 | 615 | 100 | Minus |
2R | 25286936 | 2R | 19485806..19485922 | 740..624 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:47:18 has no hits.
UFO02529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:32 Download gff for
UFO02529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-RA | 113..852 | 1..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:48 Download gff for
UFO02529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 115..854 | 1..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:51 Download gff for
UFO02529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 115..854 | 1..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:51 Download gff for
UFO02529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19485806..19485920 | 626..740 | 100 | <- | Minus |
2R | 19485983..19486104 | 504..625 | 100 | <- | Minus |
2R | 19486169..19486540 | 132..503 | 100 | <- | Minus |
2R | 19486593..19486722 | 1..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:48 Download gff for
UFO02529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15373311..15373425 | 626..740 | 100 | <- | Minus |
arm_2R | 15373488..15373609 | 504..625 | 100 | <- | Minus |
arm_2R | 15373674..15374045 | 132..503 | 100 | <- | Minus |
arm_2R | 15374098..15374227 | 1..131 | 96 | | Minus |