UFO02531.5prime Sequence
1037 bp (925 high quality bases) assembled on 2009-01-14
> UFO02531.5prime
CAGTCGACATGTTAAGAAAATTAACAAAACTATCGACCTTAAAGGTCAAA
TGTGAACTCCGCGCCCTATCCTCACTCACCCAAACATCGCAACATATATT
TGACCGCAATGCCAAGAGATTACAGAAGGAAAGGGCCGCACTCAGCGAAG
ACGTTGGACTATACGATTACTTGAAGGAGGAGATCGGCTTCCGCCTGGCT
GACAGAGTATTCGACATTAAGCGGGAGTTCAAGGCGGCGGCGGATATCGG
ATGCAGTCGCGGCTATCTGTCCAGACACATTCTGGCGGAGAGTGTGGAGC
AGCTGACGCTCACGGACACCAGTGCTACGATGCTGGAGCAGGCACAGGGC
ACTCCGGGTCTGAAAATGGTGAAACTAGTTAAGGACGAAGAGCAGCTGGA
TTTTGAGGACAATTCACTGGATCTGGTCATCTCTAGCCTAAGTCTGCACT
GGGTGAATGATCTGCCGGGCTGCTTTGTCAGAATTAAGCAGAGTCTGAAA
CCGGATGGGGTCTTTATAGCCTCCATGTTTGGTGGAGACACCCTCTACGA
GCTGCGCTCCTCGCTCCAATTGGCCGAGCTGGAGCGCAAAGGTGGCATAT
CTCCGCACATCTCGCCCTTCACTCAGATTAGGGATATTGGTTCCCTGCTT
AATCGCGCCGGCTTCACCATGCTGACAATAGACACCGATGAACTGGTCAT
CGGCTATCCCAGCATGTTCGAACTGATGTGGGATCTCAAGGGTATGGCAG
AGAACAATGCTGCATTCAATCGACCCGCTCATCTTAGTCGAGAAACGATG
CTCGCGGCCAGTGCCATCTACCAGGAGCTGTATGCAAAGCCCAACGAGAA
GGGGATACCTGCAACTTCAAATCATCTACTTTGTGGGCTGAAACCCGTCC
AATCAGCACAGCTCTGAAAGAGACGGTGAGGTGTCGCTCAGATCTAGTCG
ATTATCGAAAAGGCGGCAGCTGAAACCAAGCGGAATGCAGCTTCTAACAT
CGTGGCCGCGGCAGTATGTCTAATCTAATCTAATCTA
UFO02531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8067-RB | 1321 | CG8067-RB | 233..1208 | 9..968 | 4510 | 98.4 | Plus |
| CG8067-RA | 1146 | CG8067-RA | 58..1033 | 9..968 | 4510 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13984198..13984688 | 402..890 | 2375 | 99.4 | Plus |
| 2R | 25286936 | 2R | 13983882..13984140 | 143..401 | 1295 | 100 | Plus |
| 2R | 25286936 | 2R | 13983687..13983823 | 9..145 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:13 has no hits.
UFO02531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:31 Download gff for
UFO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8067-RA | 26..1029 | 1..983 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:06 Download gff for
UFO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8067-RA | 48..1051 | 1..983 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:48 Download gff for
UFO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8067-RA | 48..1051 | 1..983 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:48 Download gff for
UFO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13983677..13983823 | 1..145 | 97 | -> | Plus |
| 2R | 13983885..13984140 | 146..401 | 100 | -> | Plus |
| 2R | 13984198..13984798 | 402..983 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:06 Download gff for
UFO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9871182..9871328 | 1..145 | 97 | -> | Plus |
| arm_2R | 9871390..9871645 | 146..401 | 100 | -> | Plus |
| arm_2R | 9871703..9872303 | 402..983 | 96 | | Plus |
