UFO02533.5prime Sequence
1031 bp (906 high quality bases) assembled on 2009-01-14
> UFO02533.5prime
CAGTCGACATGGGCGACAAGTTGCTGGATCCGACGCAGATCATCAATGGG
CTGGCTGTGATGCTGTCCTTTTTCGTGGGCTACCGATACGCCCTGAAGCG
AGGCGATGCCAAGGACTCCGTCACCGAGGGAGCGGCGACCCCGTTCTCGC
AGGAATCTTCGGTGTCTAGCGGTTCCGAGGCTTCAGTTTCGGATAAGGGC
TATGGAGGCTTGAACGACAACTTTAAGATGGTCCTGGTGGTGCGCAACGA
TCTCAAGATGGGCAAGGGCAAAATTGCCGCCCAGTGTGGCCACGGAGCGG
TGGGTGCTTACCAGCGGGCGGTGGTCAGGACGCCTCGACTACTGCGGTCG
TGGGAGAACTGCGGTTGCGCCAAGATAGCCGTTCGCGTGGAGAGCGAGGC
GGAGCTGATGGCCATCAAGAAGGAGGCCGAGAGACAGCAACTGAACACGT
GTCTCATCCGCGACGCCGGTCGCACACAAATAGAGGCCAACTCCAAGACT
GTGCTGGCCGTGGGTCCAGCGGCTGCCGCCGACATCGACCGGGTTACCGG
CCACCTGAAATTGCTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAA
AAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTG
AGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAAT
TACGCCCGCCCTGCACTCATCGCAGTACTGTGTAATTCATTAGCATTCTG
CGACATGGAGCATCACAAACGCATGATGACTGATCGCAGCGCATCAGCAC
TGTCGCTGCGTATATATTTGCCCATGTGAACGGGGCGAGAGTTGTCATAT
TGCCACGTTTAATCAAACTGTGACTCACCAGATGCTGAAACGAAAACATT
CCATACGTTAGAATGCCAGGTACGTAACCGC
UFO02533.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1307-RE | 1159 | CG1307-RE | 107..664 | 9..566 | 2790 | 100 | Plus |
| CG1307-RD | 970 | CG1307-RD | 178..735 | 9..566 | 2790 | 100 | Plus |
| CG1307-RC | 899 | CG1307-RC | 107..664 | 9..566 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6656525..6656895 | 566..196 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 6657147..6657336 | 198..9 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:07 has no hits.
UFO02533.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:28 Download gff for
UFO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1307-RB | 172..739 | 2..571 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:01 Download gff for
UFO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1307-RC | 101..668 | 2..571 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:44 Download gff for
UFO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1307-RC | 101..668 | 2..571 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:44 Download gff for
UFO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6656521..6656893 | 198..571 | 99 | <- | Minus |
| 3R | 6657148..6657342 | 2..197 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:01 Download gff for
UFO02533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2482243..2482615 | 198..571 | 99 | <- | Minus |
| arm_3R | 2482870..2483064 | 2..197 | 97 | | Minus |
