UFO02535.5prime Sequence
1082 bp (985 high quality bases) assembled on 2009-01-14
> UFO02535.5prime
CAGTCGACATGAAAAACCTGAGTGAGACGGAAGCCGAAGTCACCATGCAA
GAAAATGTAGTCCACGAATCATTGCCCCAGATCCCGGTGGCCACTTCGGT
GAGCTGTTGCTTCGTTCTGGCTGTTCTGTACGTGGGTAGCCTCTACATCT
GGAGCACCAAACACAACCGGGATCATCCAACCACGGTCAAGAGAAGATTC
GCCAGTGTGTCCATGGTGATGCTGGCAGCCCCGTTCTTCGTTTACTTCTT
CTCATCGCCGGAGCTGCTCAGCCGGGTACCATTTCCCAAGCTGCTCGGTT
TGCGCTTGGAGGGATTGTGGCAGGCTGTTGTTATACCATACAGCCTGACG
GTGCTGCTCTTCCTGGGACCCATCTTTGTCAACATGCAGAACGAGTCCGT
GCGCTCCTACTTCGATCTGGACTACTGGAGGGGATCATTTGGCAGCATCA
TCTGGGTGCGCAACCATGTGATAGCACCGCTGAGCGAGGAGTTCGTGTTC
CGAGCCTGCATGATGCCCCTGATCCTGCAGAGCTTTTCGCCCCTGGTCGC
CGTTTTCATAACGCCGCTTTTCTTCGGAGTAGCCCACTTGCATCACATAG
CCGAACGCCTGAGCTTAGGCGTGGAGTTGAGCACTGCCCTATTGATTGGA
CTGTTCCAGTTCATCTACACCACGCTATTTGGCTTCTATTCGGCCTTTCT
ATTTGCCCGTACAGGTCATGTGATGGCTCCCATCTTGGTGCACGCGTTTT
GCAATCACATGGGTCTGCCGGATCTGCAGGATCTGTGGCAGCAGGATCTC
TGGCGACGAGTAGTGGCCATTATTCTCTACTTAGCTGGATTTGTTGGATG
GATGTTCCTGGTACACTGGCTACCGATCCGTCGATCTATGATACACCCTT
TACTGATGCAGCAAGCTTTCTAGACCATTCGTTGGCGCGCGGGCCCAGTA
GTGGTCATAATCATAATCATAATCATAATCATATCACAACTAGCTAGAAG
ATCTGTTCATGACTAGTGCTGATTCTCACAATAAAAACGCCCGGCGCAAC
GACGTTCTGAACATCGAATGGATTGAGTCATA
UFO02535.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sras-RA | 1271 | CG4852-RA | 88..986 | 9..905 | 4430 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5564325..5564818 | 414..905 | 2355 | 99.4 | Plus |
| 3L | 28110227 | 3L | 5563861..5564266 | 9..414 | 2030 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:03 has no hits.
UFO02535.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:28 Download gff for
UFO02535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-RA | 174..1090 | 1..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:25 Download gff for
UFO02535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-RA | 80..996 | 1..914 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:22 Download gff for
UFO02535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-RA | 80..996 | 1..914 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:22 Download gff for
UFO02535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5563853..5564266 | 1..414 | 99 | -> | Plus |
| 3L | 5564326..5564828 | 415..914 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:25 Download gff for
UFO02535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5556953..5557366 | 1..414 | 99 | -> | Plus |
| arm_3L | 5557426..5557928 | 415..914 | 98 | | Plus |
