UFO02536.5prime Sequence
693 bp (598 high quality bases) assembled on 2009-01-14
> UFO02536.5prime
CAGTCGACATGACCACAGCAGCGCGTCCGACCTTCGATCCAGCCCGCGGA
GGATCCGGTCGCGGCGAAAAGGATCTGAGTGCACTGAGCAAGCAGTACTC
CAGTCGCGATTTGCCAGGCCACACGAAACTGAAATACAGGGAGACTGGCC
AGGGCACCAGCGATGAGAACCGCAACCGTGACTTCCGCAAGGAGCTGGAG
GAGCGCGAACGTGAGGCGCGCTCCGGAACGGGAGCCACTTCGTCGTCGTC
GGGCAAGGCACTGCCCTCCATTGTACGCAAGGCGATTGAGGCGAACAACG
CCGGCGGTGGCAGCAGTGCCGCAAAGCGTTCCAAGCCGGACGCAGGGCAG
CAGCAAGCGCAGCAGGCGGCTCAGCAGCAGGCCGCCAATATGGACGCCGA
TGAGCCGCTGGACAACGATAGCTCCGATTCGGACAGCGATTCCGATGACG
ATGATGCCGCCCTGCTGGCCGAGCTGCAGAAGATCAAGCAGGAACGTCTG
CAGGAGACGGCGCGTCGCGAGTCGGAAAAGAGCAGAGACGACGCATACGC
ATGAGAACATCCTGTCCAGCAATCACTGATGACTATGAGCCCGGCACGCG
CTCGCAGCGGGACGTGCCTCTGGACTGGGCGGTGATCTAAAGATAAGCGC
CGCTGGACGATGATGGGGTCTTAAGATGCGCCCGATCTGGCCC
UFO02536.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c12.1-RA | 1246 | CG12135-RA | 102..798 | 9..689 | 3050 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9318383..9318931 | 672..137 | 2130 | 96.4 | Minus |
| X | 23542271 | X | 9318991..9319122 | 140..9 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:36 has no hits.
UFO02536.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:14:26 Download gff for
UFO02536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-RA | 113..824 | 1..693 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:04 Download gff for
UFO02536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-RA | 92..803 | 1..693 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:55 Download gff for
UFO02536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-RA | 92..803 | 1..693 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:55 Download gff for
UFO02536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9318358..9318928 | 140..693 | 96 | <- | Minus |
| X | 9318992..9319130 | 1..139 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:04 Download gff for
UFO02536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9212391..9212961 | 140..693 | 96 | <- | Minus |
| arm_X | 9213025..9213163 | 1..139 | 97 | | Minus |
