UFO02538.5prime Sequence
1029 bp (902 high quality bases) assembled on 2009-01-14
> UFO02538.5prime
CAGTCGACATGGAGAAAAACAAATATGTACCACGTGTAAATCAGATAGAT
GCCATCTATTTGAACAAGGACATTGCCCGCCTGATACGCGATAATCTGCT
GGAGAACTTGCAAGCCATCTCACCCGTTTTGTTCATCAAAATCCAACCGG
AGCTCGACTTGATCATTCAATCCGCAATTTGGTTTGGTTCCGTCGGCAAG
CGGTGCTCCACTTTTGGCCAACAGCTACTGGTTCTGGCTTACGATGCCGA
AAAGCTGACCGTTTCCAGGCTGGTGCTCCATTTCATCCTGACCGTCTTGC
CGGGCTACGTGAAGAGCTGGGAGGAGCGACGCTTAACAAGGCGCGTAGAA
TGGTTTAGCGAGGCGATTATGTGGGTGGAGAACAGTGCCCTGATACTGAA
CATCCTCAATTACTTTCGGTTCCTGAAGACAGGACGAAAACCCACTTTGG
TGGACTACTTATTGGGATTGGACTACATTAGTCTGCGGAACAATCAAAGG
AGAGACATTGGCTACAAGTACCTAACGAGGGAGCTGCTGTGGGGAGGATT
TATGGAAATCCTCGGACTGGTGTTGCCCATCATCAATTTCCGTAAGCTAC
AAAGAGTGCTAAAATCATGGACATTTTCCGGACGACGGTTAGAGGATAGA
GATGGTCCGGCTTTCCTGGCGCCGCAGATGACACTAAGCACCACCTGCAC
ATTCTGTGAGAGCGACCCACATTGCCCCACCACATGGGCTGTGGTCATAT
TTATTGCTATTACTGCCTTAATGCAAATGTTTAACGGATGCCAGTTTCTG
CTGCCCACTGCGTTCTGCGTGTCCTGAGTCGGGATCAAAGTGTCGCAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCAGGTAGTGGTCATATCATATC
ATATCATAATCATATCCCACTAGGCTAGGAGATCTGGTCATGACTAGTGC
TGATTCTCACCAATAAAAACGCCGGCGCACGACGTCTGAACATCGATGAT
TCTGAGCTTATGATCTATCACAGGATCCA
UFO02538.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex2-RA | 1051 | CG7081-RA | 105..947 | 9..844 | 4050 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8339390..8339822 | 123..555 | 2165 | 100 | Plus |
| 3L | 28110227 | 3L | 8339875..8340160 | 554..834 | 1215 | 98.3 | Plus |
| 3L | 28110227 | 3L | 8339255..8339334 | 43..122 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:15:02 has no hits.
UFO02538.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:23 Download gff for
UFO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7081-RA | 103..945 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:22 Download gff for
UFO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex2-RA | 105..947 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:32 Download gff for
UFO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex2-RA | 105..947 | 9..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:32 Download gff for
UFO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8339155..8339190 | 9..44 | 100 | -> | Plus |
| 3L | 8339257..8339334 | 45..122 | 100 | -> | Plus |
| 3L | 8339390..8339821 | 123..554 | 100 | -> | Plus |
| 3L | 8339876..8340160 | 555..834 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:22 Download gff for
UFO02538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8332357..8332434 | 45..122 | 100 | -> | Plus |
| arm_3L | 8332255..8332290 | 9..44 | 100 | -> | Plus |
| arm_3L | 8332976..8333260 | 555..834 | 98 | == | Plus |
| arm_3L | 8332490..8332921 | 123..554 | 100 | -> | Plus |
