UFO02539.5prime Sequence
948 bp (827 high quality bases) assembled on 2009-01-14
> UFO02539.5prime
CAGTCGACATGAAGAACTTTGCTCTCTGTCTGCTGGCCACCGCCTTGATG
AGCTGCTGCCAGGCTGCCCCCCAAAAGGCGGAGGAGCCCATCGCCATCAT
CAGCCAGGAGTCCAACATTGAGCCAGATGGATCCTACAACTATGCCTATG
AGACGGCCAATGGAATCAAAGCTGAGGAGACCGGAACCCTGAAGAAGGCC
ACTTCGCCAGACTCCAGTGACGTGATCATCGCCAGGGGATCGGTGTCGTA
CACCTCGCCCGAGGGTAACCTGATCACACTGAACTACTCCGCCGATGATG
AGAACGGTTTCCAGCCGCAGGGCGATCATCTGCCCACTCCGCCACCAATC
CCGCCAGCGATCCAGAAGGCCCTTGACTACCTGCTCAGCCTGCCACCGGC
AAAGCGTCGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGC
CCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGC
CGACATGTAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCGGCA
TCAGCACCTTGTCGCCTTGCGTAATAATATTTGCCCATGGTGAAAACGGG
GGCGAGAGTTGTCCATATGGCCACGTTTAATCAAACTGGTGAACTCACCC
AGGATGCTGAAACGAAAACATATCCCATAACCCTTAAGGATAGCAAGTTC
ACCGTACCCGCCCAATCTGCATATATTGTGTAGAACTGCGAATCGTCT
UFO02539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Ae-RA | 1186 | CG8505-RA | 107..508 | 9..410 | 2010 | 100 | Plus |
| Cpr49Aa-RB | 584 | CG30045-RB | 364..434 | 300..370 | 235 | 88.7 | Plus |
| Cpr65Av-RA | 642 | CG32405-RA | 402..440 | 297..335 | 180 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12404166..12404430 | 146..410 | 1325 | 100 | Plus |
| 2R | 25286936 | 2R | 12403381..12403508 | 18..145 | 640 | 100 | Plus |
| 2R | 25286936 | 2R | 12377158..12377228 | 300..370 | 235 | 88.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:13 has no hits.
UFO02539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:22 Download gff for
UFO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ae-RA | 108..509 | 9..410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:25 Download gff for
UFO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ae-RA | 107..508 | 9..410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:13 Download gff for
UFO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ae-RA | 107..508 | 9..410 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:13 Download gff for
UFO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12403381..12403508 | 14..145 | 96 | -> | Plus |
| 2R | 12404166..12404430 | 146..410 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:25 Download gff for
UFO02539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8291671..8291935 | 146..410 | 100 | == | Plus |
| arm_2R | 8290886..8291013 | 14..145 | 96 | -> | Plus |
