UFO02540.5prime Sequence
851 bp (733 high quality bases) assembled on 2009-01-14
> UFO02540.5prime
CAGTCGACATGCCGCGCTCCAAACGTGATAAGAAAGTTTCCCTGACCAAA
ACCGACCGCAAGGGTCTGGCTTGGAAACAGCGCATTGTGGACGACATTCG
GTTCTGCGTGGGCAAATACCCAAATATATTCGTTTTCCAAGTTCAGAACA
TGAGGAATAGCTTGCTGAAGGATCTGCGACAGGAGTTGAAAAAGAATTCT
CGTTTTATCTTTGGCAAGAATCGTGTTATGCAGATTGGCTTGGGTCGCAC
GAAGAGCGAGGAAGTGGAGCCGGAATTGCACAAGCTATCCAAGCGATTAA
CTGGCCAGGTGGGACTGCTTTTCACGGACAAATCCAAGGAGGAAGTCCTG
GAGTGGGCAGAAAACTACTGGGCCGTGGAATACGCACGCAGTGGCTTTGT
GGCCACGGAAACGGTTACCCTGCCAGCAGGTCCCCTAGAGGACTTCGCCC
ACTCTATGGAACCGCATCTGCGTTCCCTGGGCCTGCCCACCAAATTGGAG
AAGGGAATCGTTACGCTGTACAGTGACTACACGGTTTGTGAGGAGGGCAA
AGTTCTAACACCCGAACAGGCGAGAATCCTCAAGCTGGTGGGCAAGCCCA
TGGCCAAATTTCGGCTGACCATGAAGTGCTCGTGGACAAAAAGCGAAGGC
TTCCAGCTGCATGTCGAGGATGATGTGAACGACGAGGAACAGGCTGAATA
GCGCATGGAGAGGAGGCCGAGGCCGAGGCCATGGATGACACGACGACGAT
GATGACGAGAGAGGATGATGAGCAGCTTCTAGAACATTCGTTGGGCGGCG
GGCCCAGGTATTGTCAAATCTAATCAAATCTAATCTATCCCCAACTAGGC
T
UFO02540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpLP0-like-RA | 948 | CG1381-RA | 105..868 | 9..771 | 3690 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10098610..10099087 | 758..283 | 2200 | 98.7 | Minus |
| 2R | 25286936 | 2R | 10099146..10099395 | 284..35 | 1250 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 2110..2171 | 813..752 | 111 | 68.3 | Minus |
UFO02540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:21 Download gff for
UFO02540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1381-RA | 96..864 | 1..771 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:12 Download gff for
UFO02540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpLP0-like-RA | 100..868 | 1..771 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:06 Download gff for
UFO02540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpLP0-like-RA | 100..868 | 1..771 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:06 Download gff for
UFO02540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10098595..10099085 | 285..771 | 98 | <- | Minus |
| 2R | 10099146..10099393 | 37..284 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:12 Download gff for
UFO02540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5986651..5986898 | 37..284 | 100 | <- | Minus |
| arm_2R | 5986100..5986590 | 285..771 | 98 | <- | Minus |
