UFO02541.5prime Sequence
976 bp (874 high quality bases) assembled on 2009-01-14
> UFO02541.5prime
CAGTCGACATGGTCGATCCGGTGGCGGCGCTGTGCAATTACAATGTGCTG
GAGGTAATCTTCTCCTACCTGGAGCTGGACGACCTCAGTCATTGCTCGCA
GGTGTGCAAAAGTTGGTACCACTTCCTCAACGACGAGAACAGCGACGTCT
GGCGCTGGCACTGCCTGAACAAGCTGCCCAAGGAGTCCCTCAAATCGGAC
CTGCTGGCCTCCGTCTCCACGTACAAGACGAAGCTGCGGGCCTATTTTCA
CGCCTGGAGCCCCAACGACTGTTCGAGGAATGTGTACATTAAGCCGAACG
GATTCACCCTGCATCGCAATCCCGTGGCGCAGAGCACAGACGCGGCCCGG
GGCAAGATAGGATTCCGCCACGGTCGTCACACCTGGGAGGTGATATGGGA
GGGACCGCTGGGCACTGTGGCCGTCATCGGCATATCTACCAAGGAGGCGG
CTCTACAGTGTCACGGCTATGTGGCTCTGCTCGGCTCCGACGACCAGAGC
TGGGGCTGGAATCTGGTCGAGAACCACCTGCTGCACAACGGCGACATGCA
GGGCAGTTACCCGCTGCTGAACAATGCTCCCAAGTACCAAGTGGGCGAGC
GGATACGCGTCATTCTCGACTGCGAGGACAACACCTTGTCGTTCGAGAAG
AACTACGAGTTCCTCGGTGTGGCCTTCCGGGGCCTGCCGGACAAAAGCTC
TATCCCACAGTATCCGCTGTCTACGGCAATACCGAGGTCTCGATGGTCTA
TCTGGGCACGCCGTTGGACGGAGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATATCATATCATAATCATATCATATCACA
CTAGCCTAGAGATCTGTCATGACTAGTGCTGATTCTCACATAAAAACGCC
GCGCACGAGCGTTCTGAACATCGATGGAGTCTGAGTCATACTGATCTATC
AACAGGATCAAGCGAGTCGATCATAG
UFO02541.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fsn-RA | 1287 | CG4643-RA | 177..941 | 9..772 | 3800 | 99.9 | Plus |
| Fsn-RB | 1280 | CG4643-RB | 170..934 | 9..772 | 3800 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13221439..13221805 | 682..316 | 1835 | 100 | Minus |
| 2R | 25286936 | 2R | 13221862..13222169 | 316..9 | 1540 | 100 | Minus |
| 2R | 25286936 | 2R | 13221285..13221377 | 772..681 | 415 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:34:06 has no hits.
UFO02541.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:20 Download gff for
UFO02541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4643-RA | 226..1008 | 1..786 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:46 Download gff for
UFO02541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fsn-RB | 164..946 | 1..786 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:31 Download gff for
UFO02541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fsn-RB | 164..946 | 1..786 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:31 Download gff for
UFO02541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13221440..13221804 | 317..681 | 100 | <- | Minus |
| 2R | 13221862..13222173 | 1..316 | 98 | | Minus |
| 2R | 13221273..13221376 | 682..786 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:46 Download gff for
UFO02541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9108778..9108881 | 682..786 | 94 | <- | Minus |
| arm_2R | 9108945..9109309 | 317..681 | 100 | <- | Minus |
| arm_2R | 9109367..9109678 | 1..316 | 98 | | Minus |
