UFO02543.5prime Sequence
1119 bp (1021 high quality bases) assembled on 2009-01-14
> UFO02543.5prime
CAGTCGACATGCAGCATGAGCCCGAAGATCAGACTTTTCAACTCCAGGCA
CTGGAGATCTGTGAGCCGGATAGCAGTTTTGACCCCCAGAAGCCGCCAGA
GTCCGGGGAAGAGTACCTAATGCACATGTTCTACGAGAGGAAGCGATGTC
CAGCTGTGGTGACCAAAAGATCATCCAAAATCAGGAATAACACGGGAAAT
ACCACTTTAGAGATGTTGGACAATCCCGAGTTGCCTCCGTTCAAGTGCCT
GCTGCCCACGCCCGAATGGCGGGATGAGCAAGTTAAATCCTTCCAAGCAG
CCCGCTCCCAGGTCCTAGTTCTTCGTAAGGAGTTGGCCAACAACAACTAC
GACCAGTCCGGGGAACCACCTTTGACTTCCGACCAGGAGAAATGGAAGGA
ATTCTGCCGGAATCAGCAGCCCCTCCTGAGCACCCTGCTCCATTTGACCC
AAAACGACTTGGAGCTCTTGCTGGAAATGCTCAGCAAGTGGCTGCAGGAT
CCCAACACCACGGTAGACCTTCTCCACGATGTCTGGCTGGCTCGCTGGCT
GTATGCCACCTTGGTCTGCCTCCACCTTCCACTGGAACCTCACGTGTTCA
GCACCCTTCGATACATCGCCCGAACCTGCATCCATCTGAGAAATCAACTT
AAGGAGGACGAAGTGCAACGGGCAGCTCCCTACAACCTACTACTAACGCT
CACCGTTCAGGTTTTCGCACAGAATGATTTCAAGGATTACATAGCAAGCT
TTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCAT
AATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACAATAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAATCCAGATGGAGTCTGAGGTCATTACTGGATCTATCACAGAGT
CCAGCGAGCTCGATATCAAATACCCCCCCGCCCTGCACTCATCGCAGTAC
TGTGTAATCATAGCATTCTGCCGACTGGAGCCATCACAAACGCATGGATG
AACCTGATCGCACCGCATCAGCACCTTGTTCCCCCTTGGCTATATATTTG
CATGGGTGAACCGGGACCA
UFO02543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gem2-RB | 1123 | CG10419-RB | 26..762 | 7..743 | 3685 | 100 | Plus |
| Gem2-RA | 1182 | CG10419-RA | 85..821 | 7..743 | 3685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19099484..19100002 | 743..225 | 2595 | 100 | Minus |
| 3L | 28110227 | 3L | 19100054..19100271 | 224..7 | 1090 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:27:53 has no hits.
UFO02543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:19 Download gff for
UFO02543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10419-RA | 56..800 | 1..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:31 Download gff for
UFO02543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gem2-RA | 77..821 | 1..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:31 Download gff for
UFO02543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gem2-RA | 77..821 | 1..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:31 Download gff for
UFO02543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19099484..19100002 | 225..743 | 100 | <- | Minus |
| 3L | 19100054..19100275 | 1..224 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:31 Download gff for
UFO02543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19092584..19093102 | 225..743 | 100 | <- | Minus |
| arm_3L | 19093154..19093375 | 1..224 | 98 | | Minus |
