UFO02544.5prime Sequence
1053 bp (933 high quality bases) assembled on 2009-01-14
> UFO02544.5prime
CAGTCGACATGAGTCACAAAATCGCCGCTGTGTGCCTCTTGATGAGCTGC
CTGATTGCCACGGCTTATAGTGCCGCTAAGGTGCCAATTTCTATCTACTA
CGAGTCCCTGTGCCCGGACAGCGCCAAGTTCATTACGGAGCAGGTATATC
CGGCGGTGAAGGGAGAACTGCGCGATGTGGTGGAACTCACTTTCGTGCCA
TTCGGAAAGTCTCAGTTCGTTACCCAGGGCTCCGAAGTGACGTTCACCTG
CCACCACGGACCGAACGAGTGCTATGGCAATAAGGTGCATGCCTGCGCCA
TCGAGCACATTCAGGCCAACTCCTATCAGGTGGAGTACACGCGCGAGTCG
CTCACGATGGACTTCATCAACTGCCTAATGAAGGCCGGCAAGAATTTCCC
GGACAACGTCTATCCCGGCCAGCGATGCGCCTCGGAGAACCACATCAATA
ACTGGGAGAACATCAAGACCTGTGCCAACTCCACCGAGGGAAGCGTTCTG
CTCCGGAAGGCCGGCGAAAGCACCATGCGGCTCAAGGAGCCACTCACCAG
CGTGCCCACCATTCTGTTCAATGAGCAATTCGACAAGAAGGTGAATGATC
GCGCCCAGGTGAACTTGGTGGGCACCATCTGCCAATACGTATCCGCCCCG
CAGCCGCGCATCTGCAACCAGCACAACGGAGCATCGACTCCATCTTTGGC
CAGCGTAAGCGCCATCCTTAGCTCCCTGCTGGGTCTTTGGTTTATCCGCT
CCTTCTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATATCATAATCACACTAGCCTAGGA
GATCCTGGTCATGACTAGTGCTGATCTCACATAAAACGCCCGGCGCACGA
GCGTCTGACATCAGATGGAGTTCTGAGGTCATACTGATCTATCACAGGAG
TCAGCGAGCTCGAATTCAATACGCCCGCTGCCACTCATCGCAGTACTGTT
GAATCATAAGCATTGCGACTGGAGCATCCAACGCATGATGACCTGATGCA
GGG
UFO02544.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GILT1-RA | 1122 | CG9796-RA | 113..862 | 9..758 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13399073..13399435 | 575..213 | 1815 | 100 | Minus |
| 3R | 32079331 | 3R | 13398786..13398970 | 758..574 | 925 | 100 | Minus |
| 3R | 32079331 | 3R | 13399510..13399646 | 215..79 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 13401676..13401750 | 83..9 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:27:47 has no hits.
UFO02544.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:18 Download gff for
UFO02544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9796-RA | 109..870 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:27 Download gff for
UFO02544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9796-RA | 113..874 | 9..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:28 Download gff for
UFO02544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GILT1-RA | 113..874 | 9..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:28 Download gff for
UFO02544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13398774..13398968 | 576..770 | 97 | <- | Minus |
| 3R | 13399073..13399432 | 216..575 | 100 | <- | Minus |
| 3R | 13399510..13399644 | 81..215 | 100 | <- | Minus |
| 3R | 13401679..13401750 | 9..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:27 Download gff for
UFO02544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9224496..9224690 | 576..770 | 97 | <- | Minus |
| arm_3R | 9224795..9225154 | 216..575 | 100 | <- | Minus |
| arm_3R | 9225232..9225366 | 81..215 | 100 | <- | Minus |
| arm_3R | 9227401..9227472 | 9..80 | 100 | | Minus |
