Clone UFO02547 Report

Search the DGRC for UFO02547

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:25
Well:47
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG1236-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO02547.5prime Sequence

688 bp (587 high quality bases) assembled on 2009-01-14

> UFO02547.5prime
CAGTCGACATGCCACCGCGGTTGCCGTTCGGACAAGTCAGAAACTTATTG
ATTCAGGGACACATAATTCGAAGGATGAGCTCCCAACACAAGGTGTACGT
AACCAGGCCGGATGTGGATGACAGCGGTCTGGAGCTGCTGCGCAAGAGCT
GCCAAGTGAGTACCTGGCATGAGACCAATCCGGTGCCCCGCTCCGAGCTT
ATCCGCGTCGTGGCCGGAAAAGATGCCCTTTACTGCGCTCTAACGGACAA
GGTTGACAAGGAAGTCTTGGATGCTGCCGGTCCTCAGTTGAAGTGCGTGG
CAACTATTTCGGTGGGTTACGATCACATCGACGTGGAGGAGTGCAGGAAA
CGTGGAATTCGAGTGGGCTTCACACCGGACGTCCTAACGGATGCCACGGC
AGAATTAACGCTTGCCCTGCTTCTGGCCACCAACCGCCGACTATTCGAGG
CCAACAAGCAGTTTACAACGGCGGCTGGAAGTCGTGGGCCCCCATGTGGA
TGTGCGGCCAGGGACTGAAGGGCTCCCGGGTCGGCTGCTGGGCTTCGGCC
GCATCGGCCAAGAGATAGCGGCACGCATTGTGCCATTTAGCCGACGGAGA
TAACATACACAACACGATCACTGCGCCCCAGGAGGCGCTGCTGTGATGCC
CGCACGTGGACTTGACAGAATGCTTCCGGAGTCGACTT

UFO02547.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-RA 1190 CG1236-RA 42..725 9..684 3145 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5737003..5737489 147..630 2285 99.4 Plus
3R 32079331 3R 5736789..5736928 9..148 700 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:22:16 has no hits.

UFO02547.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:26 Download gff for UFO02547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 40..729 1..684 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:26 Download gff for UFO02547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 36..725 1..684 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:15 Download gff for UFO02547.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 36..725 1..684 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:15 Download gff for UFO02547.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5736783..5736928 1..148 97 -> Plus
3R 5737005..5737548 149..684 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:26 Download gff for UFO02547.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1562505..1562650 1..148 97 -> Plus
arm_3R 1562727..1563270 149..684 97   Plus