UFO02548.5prime Sequence
815 bp (669 high quality bases) assembled on 2009-01-14
> UFO02548.5prime
CAGTCGACATGGCTTCTGCTACCCAATTGACCCACAGAGGTATCCATTTG
GCCGGACTGTACAGATCTTCTTGGTCTAAGCCCTTGTTCCGACATTTGGC
AACAAAGCCTATACTGTATTCCTATTGGCCTAGTTCGTGTTCTTGGAGAG
TTCGCGTTGCGCTGGCAATAAAGAAGATTGATTATGACATTAAGCCGACT
TCTTTGCTAAAAACAGTTAGCGGACATGCCTATACGGATGAATATAGGGA
AGTCAATCCGATGCAAAAGGTTCCCTCGTTGAAGATTGATGGCCATACCT
TGTGCGACTCGGTGGCTATTATCCACTACCTGGAGGAAACTCGACCTCAG
CCAGCACTTCTGCCCCAGGATCCGGTTAAAAGAGCAAAGATCCGTGAAAT
TGTGGAGCTCATTTGCTCGGGCATCCAGCCACTGCAAAATGTATCTGTCC
TAGATCATATAGGCAAGGATCAGAGTCTGCAATGGGCACAACACTGGATT
TCTCGAGGATTTCAGGTCTCGAAAAGGTTCTTTCCCATTCGGCGGGCAAA
TTCTGTGTGGGAGATGAGCTCAGCATGGCTGATATTTGCCTGGTACCTCA
GTGCGCAATGCCAGGAGATACAAAGCTGACCTGACCCCATATCCCACCAT
AGTACGCTTGATCAGAACTACAGACTTGATGTCTTCAAAGCACTCATCCA
GTACCAGCAGATTGTCCACCTGATTCGCAAAAAAGCAGCTTTCTAGACCA
TCGTTTGGCCGCGGGGCCAGGTAGTGTCTATCTAATCTATCTAATCATAT
CCCACTAGCTAGGAT
UFO02548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstZ1-RA | 913 | CG9362-RA | 102..838 | 9..734 | 3395 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9455781..9456112 | 617..288 | 1545 | 99.1 | Minus |
| 3R | 32079331 | 3R | 9456166..9456445 | 288..9 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 9455674..9455719 | 661..616 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:33:24 has no hits.
UFO02548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:25 Download gff for
UFO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9362-RA | 93..834 | 1..734 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:16 Download gff for
UFO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstZ1-RA | 97..838 | 1..734 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:09 Download gff for
UFO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstZ1-RA | 97..838 | 1..734 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:09 Download gff for
UFO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9455781..9456111 | 289..617 | 99 | <- | Minus |
| 3R | 9456166..9456450 | 1..288 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:16 Download gff for
UFO02548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5281888..5282172 | 1..288 | 98 | | Minus |
| arm_3R | 5281503..5281833 | 289..617 | 99 | <- | Minus |
