UFO02549.5prime Sequence
1010 bp (895 high quality bases) assembled on 2009-01-14
> UFO02549.5prime
CAGTCGACATGGATTTGGAGAACAACAACAATACGCCATTGACCGGCAAA
CAAGCCGAAAAATGTGCGAAAAAGCGAAAATGTGTAATAACATTAGATGA
AAAGCAAGTGGAATCCAAAAGACTGAAAAAGGAGGAATCAAATGTGGAGG
CCACAAGCCGTCCGCCTGCGCAGAGTCCCAAAAAACGGCTCCATCTAAAC
GGAAAGCCCATGCAAAACAAGGACCTTAACTTCAAGTACGGCAACTATAA
GCACTACTACGGCAAGCGCATCCTGAACAAGGATTTTCACGACATACGCC
TGGACGTGCTTGGCACGCAACCGGATTTGTTTCGGAACAAGCAGCTGCTT
GACATCGGCTGCAACTCTGGCCACCTGTCCATCCAGATTGCCAGGAAATT
CGAGGTTAAGAGCCTCGTGGGCCTGGACATAGATCGGGGGCTAATAAATG
ATGCCCAAAAAACCGTCAGTCACCTGAAACGTCACGCAACCCCGGGGCAG
GGGATACCCCACATACAGTTTGTGCACGGGAACTACGTCCTGGAGGACGA
CGTCCTGCTCGAAATTGAACGGCCGCAGTTCGACGTCATACTCTGCCTGT
CTGTCACTAAGTGGATCCACCTTAATTTCTGTGATTCCGGCCTGAAGCAG
GCCTTCAGACGCATGTACCTGCAGCTGCGCCCGGGCGGCAAGCTGATCCT
GGAACCTCAGTCCTTCGACGGCTACAGGAGGCGCAAGAAGCTATCGGACA
AATAAGAGATACTACATGCATTAAATTCCGACCTGATCATTTCACCGAAT
ATCTGCTTAGCCCGGAAGTGGGCTTTGCCGAAATGAAACTTATGGGCATA
CCGGAGCACTGCAAAGTAGATCAGCGACGATCAAATTTTTACAAGTCGCA
GCTTCTAGACATTCGTTGGCGCGCGGGCCAGTATGGTCATTATCTAATCT
ATCATATCTAATCCACTAGCTAGGAATCTGTATGACTTGCTGAATCCCAT
AAAAGCCGGG
UFO02549.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:50:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1239-RC | 1052 | CG1239-RC | 114..1008 | 9..894 | 4235 | 98.9 | Plus |
| CG1239-RB | 1058 | CG1239-RB | 120..1014 | 9..894 | 4235 | 98.9 | Plus |
| CG1239-RA | 1051 | CG1239-RA | 113..1007 | 9..894 | 4235 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5733695..5734433 | 9..747 | 3680 | 99.9 | Plus |
| 3R | 32079331 | 3R | 5734529..5734628 | 770..869 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:50:28 has no hits.
UFO02549.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:09 Download gff for
UFO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1239-RA | 81..987 | 1..901 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:50 Download gff for
UFO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1239-RA | 109..1015 | 1..901 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:27 Download gff for
UFO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1239-RA | 109..1015 | 1..901 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:27 Download gff for
UFO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5733691..5734432 | 1..746 | 99 | -> | Plus |
| 3R | 5734502..5734666 | 747..901 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:50 Download gff for
UFO02549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1559413..1560154 | 1..746 | 99 | -> | Plus |
| arm_3R | 1560224..1560388 | 747..901 | 93 | | Plus |
