UFO02551.5prime Sequence
944 bp (819 high quality bases) assembled on 2009-01-14
> UFO02551.5prime
CAGTCGACATGAAGTACGCTGTGATTGCCATCGCTTTGTTTGCGATTACT
ACCGCTTCGGCCTCTTCCGCTGGCCAGTTTCTGCCCCGTGCCTTCTTCAC
CTTGGACTCGGAGGGCCACCAGTCGAATGTCCATCCCGTGAATGCCCATC
TCCTGAGGCGTCTGCGTCGTCAGTCCAGTTCGTCTTCCTCGTCATCATCC
TCCTCGTCCTCCAGTGGAGGAAACGTCTTCACCTACGCCTCACACAGCGT
TCAGAATGCCGATGGCTCCGGTCATTCTGGCTCCTCTTACACCCAGCAGG
CCGCTGCTCCAGTGCTTGGTGGTGTGTCCTTTGATGAGCGTTTCGGCGAG
AGCTCCTTAACTGGAGGCGACAACTATTATCCCACCTACAATGGCTACAC
CAGCGCAGCCTCCATCAGCAGCAACAGCGGAGTAGGAAGCACCGGTAGCT
ATCAGCACATCTCCGGAGTTGGACCCATTCCCGCCACCCAAATCCAGCAG
ACCGTGGCCGTTGTCGATGCCAGTGGCAACCAGAAGGTGACCAACATCCA
GGGTGCCACCGATTCCAACGGCGTTCTCAATATCAAGAAGACCGAATCCA
CTTACTCATCCAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTCTGAACAAATCCAGATGGAGTCTGAGTCA
TACTGATCTATCACAGAGTCAGCGAGCTCGATATCAAATACGCCCCGCCT
GCCCTCATCGCAGTACTGTTTATCATAGCATTCTGCGACTGAGCCATCCA
AACGCATGATGACTGATCGCCAGCGGCACCAGCACCTTGGCGCC
UFO02551.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hui-RA | 821 | CG10200-RA | 165..770 | 9..614 | 3030 | 100 | Plus |
| hui-RB | 734 | CG10200-RB | 78..683 | 9..614 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14809585..14809880 | 319..614 | 1480 | 100 | Plus |
| 2R | 25286936 | 2R | 14809273..14809523 | 69..319 | 1255 | 100 | Plus |
| 2R | 25286936 | 2R | 14808583..14808643 | 9..69 | 305 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..169 | 382..430 | 119 | 71.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9199 | 382..430 | 119 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6824 | 367..428 | 111 | 68.3 | Plus |
UFO02551.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:19:01 Download gff for
UFO02551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10200-RA | 128..740 | 1..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:17 Download gff for
UFO02551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10200-RB | 71..683 | 1..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:58 Download gff for
UFO02551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hui-RB | 71..683 | 1..614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:58 Download gff for
UFO02551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14808576..14808643 | 1..69 | 94 | -> | Plus |
| 2R | 14809274..14809523 | 70..319 | 100 | -> | Plus |
| 2R | 14809586..14809880 | 320..614 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:17 Download gff for
UFO02551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10696081..10696148 | 1..69 | 94 | -> | Plus |
| arm_2R | 10696779..10697028 | 70..319 | 100 | -> | Plus |
| arm_2R | 10697091..10697385 | 320..614 | 100 | == | Plus |
