UFO02553.5prime Sequence
1101 bp (988 high quality bases) assembled on 2009-01-14
> UFO02553.5prime
CAGTCGACATGGGAGCAATCAATATGAGGATCTGTGTCGTGGCCGCATGT
CTCCTAATGGCATCGCAGGCCACCGGCTACACGATGGATGATCTGTGCCA
ACAGTGGTCGGGCTATGGATACATCGGCAATCCGAGCAACTGCCATGCCT
GGGGATACTGCAAGAACCAGGAGGTTGTGGCCTGGGGCACCTGTCCCAAC
GGCTTGGTGTTCAACGCGCAGGCCGGCAGCTGTGATTACGCTAATACCAC
GGTGTGCTCCACCAGTGCCGTTGAGACATGCTCCAACGTCAAATCTCCCA
TGTATGTGGCCAATCCGTTGAACTGCACCGAATACGCCTACTGCGATGGC
ACAGGCCAAATCTCCTATGGCGATTGCGGCACCGGCGGCGTCTATTCGGC
ATCCTCCACAAAATGTATATGGGGACCCGCCTGCCCGCAGGACACCATCT
GTCGGTTCATGTTGTCCAACATCTTTGTAGGCGATCCGAACCAGTGCGGC
AACTACATCAACTGCGTCAACGGCTATGGCACTTCCGAAAAATGTTCCAG
CACCGCCAATCCCTACTATAATAAAGCCACTGGCAACTGCCAGTCGACGA
ATCCGTGCACCGGCGAAGATTCAAACAGTGGAAACTCTGACCAGTTCACT
GTTGGGCAAACAAATGCAACTGCTTGTGACGAAGAAGCTTTTAAAGCAGC
AGATCCACTTACTGTAAATGGGGAATCTGTTGACTATAGGTACGTTTCTG
ATGGTGTCACCTGCTATGGGTACTACTACTGTGCAGCAGTAAACGCCACT
GGCTATTGGAACCAATGTCCCACCGGTACCCAATTCAATGCTGGCAAGTG
CGTTTCGCCAGCCTCCTTTGTCTGTACCCATAACCGATGTGGGAACGTTA
ACAATCATTCATGGCAGATGAGGTTGCAAGAACTACACAATCTGCTCAGC
GAATAACCGGATCATGTCCACCAATGCGCCGTACTACGACGAGGTGAACA
AATATCTGCACAACAAATCCCGATACCCATTTTAAATCGAACGGCTAGAA
CAGCAAGCTTTCTAGAACATTCGTTTGGGCGCGCGGCCCAAGTTAGGGCT
A
UFO02553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6933-RE | 1377 | CG6933-RE | 209..1261 | 9..1052 | 4915 | 98.5 | Plus |
| CG6933-RB | 1246 | CG6933-RB | 78..1130 | 9..1052 | 4915 | 98.5 | Plus |
| CG6933-RD | 1413 | CG6933-RD | 250..1297 | 14..1052 | 4890 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20218673..20219665 | 1001..14 | 4715 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:52 has no hits.
UFO02553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:59 Download gff for
UFO02553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6933-RB | 69..1100 | 1..1024 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:09 Download gff for
UFO02553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6933-RB | 69..1100 | 1..1024 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:05 Download gff for
UFO02553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6933-RB | 69..1100 | 1..1024 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:05 Download gff for
UFO02553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20218650..20219670 | 8..1022 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:09 Download gff for
UFO02553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20211750..20212770 | 8..1022 | 98 | | Minus |
