UFO02554.5prime Sequence
1032 bp (909 high quality bases) assembled on 2009-01-14
> UFO02554.5prime
CAGTCGACATGTTTAAGCCACAATATCACTTGGCCGCAGTGCTGCTGTGT
TTCGTCTTCACCACAGCGCAGGTTGTGCCAAATGCAGAAATCGGTCGGAT
TACTATCCAAGTGCCGTTGCTGTCCAATGGAAAGCCCGTGATCCTGACCA
ACCAGGAACGGGAAGAGATCGCCACCGTGCAGGAGATCAAGCCGGGAAAG
GTCCATGTTGTCCAGGAGGTAGTGGTGCCACCTACTGTGAAGTCTGATAA
TAAGGTGCGGGTGACAAGATCAGTTTCGGATTCTGGTATCCCTAACCATG
GAATCCCAAATCCTGGCATCCCTAACCATGGAATACCGAATCGTGGAATT
CCTAATGATGGAATCCCAAATCCTGGCATTCCTAATCATGGAATTCCAAA
TCCTGGAATCCCTAATCATGGAATTCCAAACCGTGGCATTCCTAATGATG
GAATCCCGAATCCTGGCATTCCCAATCACGGTATTCCCAACCCTGGAATC
CCTAATCATGGAATTCCAAACCGCGGCATTCCTAATGATGGAATCCCTAA
CCCTGGCATCCCCAACCATGGAATCCCCAATCCTGGCATACCCAATCCCG
ATGCTTCCGAACTTAAACCAGTTGTTGTAATGCCCAGCAGTCGTACCACC
AGCGCACCCGCATCTACATCAATGCCCAAGCGAGTACCCACCAGAAATTG
TTTCCATCTTCTGATGGGTGGCACGACCACTACGTCGCCAGTGGATATGA
TGACACCACCATCTATGGAAAACTGCGATGAGCTATGCACCAAGTTCGAG
TACTCGCCCATTTGTGCCCACATGGAATCTGCATCCATGAGTTTGCAAAT
CAGTGCGTAATGAACACCTTCAACTGCAACACGCGATTTGTCGTCGTGCA
TGATGAGATGTGTGCGACTGGAGTTTGCATGAGCATGCAGAGAGACTGCC
TAGCAGCTTCTAGAACATCGTGGCGCGCGGCCAGGTATGGTCTAATCTAT
CTAACCTAATCAAATCCAACTAGCCTTAGGAT
UFO02554.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7924-RA | 1079 | CG7924-RA | 19..953 | 9..933 | 4435 | 98.9 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 293..517 | 373..597 | 705 | 87.6 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 383..607 | 283..507 | 705 | 87.6 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 293..575 | 313..595 | 605 | 80.9 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 323..605 | 283..565 | 605 | 80.9 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 294..546 | 344..596 | 545 | 81 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 354..606 | 284..536 | 545 | 81 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 293..487 | 403..597 | 450 | 82.1 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 413..607 | 283..477 | 450 | 82.1 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 294..456 | 434..596 | 320 | 79.8 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 444..606 | 284..446 | 320 | 79.8 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 293..427 | 463..597 | 285 | 80.7 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 473..607 | 283..417 | 285 | 80.7 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 293..397 | 493..597 | 210 | 80 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 503..607 | 283..387 | 210 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14233577..14234420 | 37..879 | 4170 | 99.9 | Plus |
| 3L | 28110227 | 3L | 14233823..14234047 | 373..597 | 705 | 87.6 | Plus |
| 3L | 28110227 | 3L | 14233913..14234137 | 283..507 | 705 | 87.6 | Plus |
| 3L | 28110227 | 3L | 14233823..14234105 | 313..595 | 605 | 80.9 | Plus |
| 3L | 28110227 | 3L | 14233853..14234135 | 283..565 | 605 | 80.9 | Plus |
| 3L | 28110227 | 3L | 14233824..14234076 | 344..596 | 545 | 81 | Plus |
| 3L | 28110227 | 3L | 14233884..14234136 | 284..536 | 545 | 81 | Plus |
| 3L | 28110227 | 3L | 14233823..14234017 | 403..597 | 450 | 82.1 | Plus |
| 3L | 28110227 | 3L | 14233943..14234137 | 283..477 | 450 | 82.1 | Plus |
| 3L | 28110227 | 3L | 14233824..14233986 | 434..596 | 320 | 79.8 | Plus |
| 3L | 28110227 | 3L | 14233974..14234136 | 284..446 | 320 | 79.8 | Plus |
| 3L | 28110227 | 3L | 14233823..14233957 | 463..597 | 285 | 80.7 | Plus |
| 3L | 28110227 | 3L | 14234003..14234137 | 283..417 | 285 | 80.7 | Plus |
| 3L | 28110227 | 3L | 14234033..14234137 | 283..387 | 210 | 80 | Plus |
| 3L | 28110227 | 3L | 14233823..14233927 | 493..597 | 210 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:54:33 has no hits.
UFO02554.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:58 Download gff for
UFO02554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7924-RA | 15..965 | 1..945 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:01 Download gff for
UFO02554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7924-RA | 15..965 | 1..945 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:36 Download gff for
UFO02554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7924-RA | 15..965 | 1..945 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:36 Download gff for
UFO02554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14233580..14234495 | 40..945 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:01 Download gff for
UFO02554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14226680..14227595 | 40..945 | 98 | | Plus |
