UFO02556.5prime Sequence
1037 bp (928 high quality bases) assembled on 2009-01-14
> UFO02556.5prime
CAGTCGACATGTCGGCCAGAAGAGCAACCCATGCAGGCAGCTGGTACACG
GACTCGGGCGCCGAGCTCTCGAGACAGTTGGATCGTTGGCTGGGTGCCGC
AGATTTGTCCCATGGACCGGCTCGTGCCATCATTGCTCCACATGCTGGAT
ATACGTACTGTGGAGCCTGCGCTGCCTTTGCCTATCGCCAAGTTAGCCCA
GTTGTCGTCAAGCGAATCTTCATACTGGGTCCCTCGCATCATGTGCGTCT
GCGTGGCTGCGCCTTATCCGTGGCGAAGAAGTACAGGACACCCCTCTATG
ATCTCAAAATTGATGCTCAGATCAACTCTGAGCTTGAGAAGACTGGAAAG
TTTTCTTGGATGGACATGAAGACTGACGAGGATGAACACTCCATCGAGAT
GCATTTACCCTACATTGCCAAAGTGATGGAGGACTACAAGGATCAGTTCA
CCATTGTGCCTATTCTGGTGGGTTCGCTCAATCCCGAACAGGAGGCGCAG
TACGGCAGCCTGCTGTCCTCGTATCTGATGGACCCCACCAATCTGTTTGT
GATATCTTCCGACTTTTGCCACTGGGGCCATCGCTTCAGCTATACCTACT
ATGACAGCTCCTGCGGAGCGATTCACAAGTCCATCGAGAAGCTGGACAAG
CAGGGCATGGACATCATTGAGTCGCTCAATCCGCACTCCTTCACCGAGTA
CTTGCGCAAGTACAACAATACGATATGCGGACGCCATCCCATCGGAGTAA
TGCTAGGCGCCGTGAAGGCACTGCAGGATCAGGCTACGACAAGATGAGTT
TCAAGTTCCTCAAGTACGCCCAGAGCAGCCAGTGTCAGACATTGAGACTC
AGCGTTAGCTACGCCTCAGATCGCTCGTCTTCGAGATGCAGCTTTCTAGA
CATTCGTTTGGCGCGCGGCCCAGTAGTGGTCATATCATATCATAATCATA
ATCATAATCACACTAGCTAGGAGATCTGTCATGACTATGCTGATTCTCAC
ATAAAACGCGCGCACGACGTCTGACCATTCGATGGAT
UFO02556.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8031-RA | 1318 | CG8031-RA | 131..1015 | 9..888 | 4285 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13008687..13009146 | 888..434 | 2035 | 98.7 | Minus |
| 3R | 32079331 | 3R | 13009382..13009494 | 321..209 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 13009204..13009315 | 433..322 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 13009689..13009771 | 139..57 | 415 | 100 | Minus |
| 3R | 32079331 | 3R | 13009559..13009627 | 208..140 | 345 | 100 | Minus |
| 3R | 32079331 | 3R | 13011131..13011180 | 58..9 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:19 has no hits.
UFO02556.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:56 Download gff for
UFO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8031-RA | 70..960 | 1..888 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:53 Download gff for
UFO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8031-RA | 125..1015 | 1..888 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:30 Download gff for
UFO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8031-RA | 125..1015 | 1..888 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:30 Download gff for
UFO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13008687..13009146 | 434..888 | 98 | <- | Minus |
| 3R | 13009204..13009315 | 322..433 | 100 | <- | Minus |
| 3R | 13009382..13009494 | 209..321 | 100 | <- | Minus |
| 3R | 13009559..13009627 | 140..208 | 100 | <- | Minus |
| 3R | 13009689..13009770 | 58..139 | 100 | <- | Minus |
| 3R | 13011132..13011186 | 1..57 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:53 Download gff for
UFO02556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8835411..8835492 | 58..139 | 100 | <- | Minus |
| arm_3R | 8836854..8836908 | 1..57 | 92 | | Minus |
| arm_3R | 8834409..8834868 | 434..888 | 98 | <- | Minus |
| arm_3R | 8834926..8835037 | 322..433 | 100 | <- | Minus |
| arm_3R | 8835104..8835216 | 209..321 | 100 | <- | Minus |
| arm_3R | 8835281..8835349 | 140..208 | 100 | <- | Minus |
