UFO02557.5prime Sequence
1061 bp (962 high quality bases) assembled on 2009-01-14
> UFO02557.5prime
CAGTCGACATGTTTATGCCAAAGGCCCATCGTGTCGCGATCTACGAGTAC
CTCTTCAAGGAGGGCGTGATCGTGGCCAAGAAGGATTTCCATGCCCAGAA
GCACCCGGAACTGGAGTCGATCCCCAACTTGCACGTGATCAAGGCGATGC
AGTCGCTCCACTCGCGCGGACTGGTTAAGGAGCAGTTCGCCTGGCGCCAC
TACTACTGGTACCTCACCAACGAGGGAATCGAGGAGCTGCGCAGCTACCT
CCACCTGCCGCCCGAGATCGTGCCCTCGACGCTGAAGCGCCCTGCCCGCT
CGGAGACCGTCCGTCCCCGTCCCGCCGTTGGCGGCCCACGCGGACCCGGT
GACGCCTCCAAGACCGGAGAGGATCGCTCCGCCTACCGACGTGCTCCCGG
CGGCAGCGGAGTGGACAAGAAGGGCGATGTTGGACCCGGTGCCGGAGAGG
TCGAGTTCCGTGGCGGATTCGGACGCGGATCGCGCAACGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAG
TCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAG
TACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAAC
GGCATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGT
ATATATTTGCCCATGGTGAAACGGGGCGAGAGTGTCCATATTGCCACGTT
TAAATCAAACTGGTGAAACTCACCCAGGATGGCTGAGACGAAACATATCC
TCATAAACCCTTTAGAAATAGGCAGTTCACCGTACACGCCAATCTTGCAA
TATATGTTGTAGACTGCGAATCGTCTGTATCACTCCCGCGATGAACGTCA
GTTGTCATGGA
UFO02557.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS10b-RD | 809 | CG14206-RD | 168..647 | 9..488 | 2400 | 100 | Plus |
| RpS10b-RC | 1469 | CG14206-RC | 97..576 | 9..488 | 2400 | 100 | Plus |
| RpS10b-RB | 743 | CG14206-RB | 102..581 | 9..488 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19598434..19598913 | 9..488 | 2400 | 100 | Plus |
| 3R | 32079331 | 3R | 27652836..27653104 | 9..277 | 640 | 82.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:29 has no hits.
UFO02557.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:54 Download gff for
UFO02557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS10b-RC | 78..569 | 1..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:14 Download gff for
UFO02557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS10b-RB | 93..584 | 1..492 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:55 Download gff for
UFO02557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS10b-RB | 93..584 | 1..492 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:55 Download gff for
UFO02557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19598430..19598913 | 1..488 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:14 Download gff for
UFO02557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19492463..19492946 | 1..488 | 99 | == | Plus |
