UFO02558.5prime Sequence
1111 bp (995 high quality bases) assembled on 2009-01-14
> UFO02558.5prime
CAGTCGACATGCATCGATTGGTGGTCATATTCAGTTTCTGCCTGCTTTTG
GTCGCAGGACAATCGGTCGTGGAGCCCCAGGAGCTCTCCGATAGCACCAC
CACTTACATTGTCGATGGCTTTCCAGATGAATCTCAAGAGCTACCCGGCA
TAGTTGCGGAGACCGATGAGGAGATTGAAATGAATGCGCACAAGATCAAC
TGGCTGCCCGTTTGGGAGGAGCAGGAGCATGTACGATTCGCACGGGAAGT
GACCGAAAAGCCAGTTGGCACCGCAGCCACTGCCGAGAACTCCACGCCCA
AAGACACGTTGGATCTCGTCCTGCAGCCCAAGGAGAACAAGGAGTGCCCC
ACCAATGCTGAGCGTGGACTCACCAACCTCGTCCGCGTAGCTCGCCCACT
TTTGCCTGCTGCCACACTGAAGAACATCCTGGCGAATGGCGTTGAGGATC
CCCAGGTTCAAGAGTTGATCAAGTTGCTCCGCAGCGATAACTTCAAAACG
CAAGTGCAGCTGCTGAAGGCCACCAAGCAGCACCAGCTGCTCCATGACTA
TGTCTGTCGGCGACTTAAATTGGATCCCACTTACTACGCGGAGTACGTGC
GCGTGTTCCTCGACCTACACATTTCCGACCCACCGACCATTAAGTTGCCC
AACCGTCGCCCGGGTGTCCGCGGATTGCTCCAGGATCTCCGTGAAGCCTT
GCCCCGTACCGCCTTGAGGAATATGTACCAGCAACTCTACTCCTCCGACT
CGGAGCTCTCGAGCGCCATTCGCCTGATCCGCGGCTCGGAATTCCGGCGG
CTGCTGCGCGATCTGCGTCAACTTAAGGAGTACCGCTCCCTGGCCGCCGA
TCTGGAAAAGTCTGGTGTTCCTCTGCGCCAGCTGCAGCACTGGTGGCTAA
CGCCCTTGGTGGAGCACCGTGACATGGCCGGAGAGACCGTCATCTGGAGT
CTGCAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCAGGTAGTGGTCAT
ATCATAATCATAATCATAATCATAATCACAACTAGCTAGGAGGTCCTGGT
CATGACTAGTGCTGATTCTCACAATAAAACGCCGGCGCAACCGAGCGTCT
GACCATCGATG
UFO02558.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9021-RB | 1382 | CG9021-RB | 29..975 | 9..952 | 4645 | 99.6 | Plus |
| CG9021-RA | 1201 | CG9021-RA | 29..975 | 9..952 | 4645 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5903585..5904463 | 952..77 | 4230 | 99.5 | Minus |
| 2L | 23513712 | 2L | 5904589..5904661 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:05 has no hits.
UFO02558.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:16 Download gff for
UFO02558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 10..964 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:59 Download gff for
UFO02558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 10..964 | 1..956 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:42 Download gff for
UFO02558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 25..979 | 1..956 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:42 Download gff for
UFO02558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5903585..5904459 | 81..952 | 99 | <- | Minus |
| 2L | 5904590..5904665 | 1..80 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:59 Download gff for
UFO02558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5903585..5904459 | 81..952 | 99 | <- | Minus |
| arm_2L | 5904590..5904665 | 1..80 | 95 | | Minus |
