UFO02560.5prime Sequence
1100 bp (987 high quality bases) assembled on 2009-01-14
> UFO02560.5prime
CAGTCGACATGCGTTTCCTGGTAGTCTTAGCCTGCCTGGTGGCCGTTTGT
GCCGCCGGCACTCTGCCCAACGAGGTGGAGCAGCGTCTGTTGGAGCTGGC
GGATCAGAATGGTGACATCGATCTGGTCGCGGAGCCCCAGGAGGGAGTTG
AAGTTGCCCCCCAGTTTATTGTGTCCTGGCAGGCGCGTCGCTTCATCCGC
AAGCTCCAGAAGCAGATGGAGTGCGGATGGCCCCAGTATGGCATTCCCGT
GCTGGCTCCTCTTCGCATCAACGAATTCGACCTAGACTACAAAAAGGGCA
TTTTCGAGACCTTGAACCATGTGTTCCGCCTGAAGATCGCCGGTCTGAAT
GACTTCAATATCCAGAAGTTCAAGCTGAACGTGATCACCAGCAAGATTAC
CTTCGATTTTCTGTTCAAGAACATCGATACCACCGCCCAGAAGTACGACA
CTGATACGCTGATCGATGCCCTGCGCCAGTTGGGTCTGTCCGTGGAGTAC
GAGGGATCCGGAGAGCTGTTGTTCGATTTGGTCAACCTGCGTATTGCTGG
CACTCTGAAGTACAAGCTTCCCATGCTGTGGGGTTCCGCCAAGATCACCT
CGCTGAAGACCACCATCTCGTTGGAGTCTGTGACTTCGGACATCACTGGA
TTCATGGGCAACGGCAAGATCAACCGCGCCATCAACAGCCAGCTGGAGAA
CATCGTGGTAAAGGGAATCAATGGCAACCAGGACGCCATTTCCGAGACCA
TTGAGAACGCCATCGTGCCGCGAGTGAACAAGATGCTGAAGGCAAGGACT
TCTGGACCGTCGTGGACCTGATCCTGGCCAGCAGCGACGGTGAGAGCGAG
GACGATCCGATTGTCGTTGATTGCGATCCCTCGCCGATCCTTGGCCGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATATCA
TAATCATATCATATCATATCCACAACTAGCTAGAGATCTGGTCATGACTA
GTGCTTGATTCTTCACAATAAAACGCCCGGCGGCACGAGCGTTTCTGAAC
CATTCGATGGAGTTCTGGAGGTCTATTACTGGATCTTACACAGGAGTCAG
UFO02560.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7953-RB | 1154 | CG7953-RB | 37..925 | 8..894 | 4380 | 99.7 | Plus |
| CG7953-RA | 1092 | CG7953-RA | 37..925 | 8..894 | 4380 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13848250..13848981 | 152..882 | 3610 | 99.9 | Plus |
| 2L | 23513712 | 2L | 13847961..13848106 | 8..153 | 730 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1518..1551 | 102..66 | 115 | 83.8 | Minus |
UFO02560.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:12 Download gff for
UFO02560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7953-RA | 11..907 | 1..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:25 Download gff for
UFO02560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7953-RA | 29..925 | 1..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:54 Download gff for
UFO02560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7953-RA | 29..925 | 1..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:54 Download gff for
UFO02560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13847953..13848106 | 1..153 | 98 | -> | Plus |
| 2L | 13848252..13848996 | 154..898 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:25 Download gff for
UFO02560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13847953..13848106 | 1..153 | 98 | -> | Plus |
| arm_2L | 13848252..13848996 | 154..898 | 99 | <- | Plus |
