UFO02562.5prime Sequence
979 bp (842 high quality bases) assembled on 2009-01-14
> UFO02562.5prime
CAGTCGACATGAATATTCTGTGCACCGTGCTTATCTTCGCCAGCGTTTTG
GCGGCCAACGCCAAGCCCAATAACCAGATCCAGAGTGCCTTGGATCAGTA
TTTGGTGCATGCTCGCAGTCTGGATACATTTGTTTCCGAGGATATGACCA
CGCAGTGCTTCAACTTATACATGCCTATGCTGAATCAAGTGGCTGCCACT
TTCTCGAGTTCCTATCAGGACTGCATCACCACCGCCAATGCCCAGATCGC
CAATTTGACCGCCCAGGCGGAGCAGCAGCAGAAGACCTATCAGTCCGACG
TTTCAACACTCTGCAGTGCCTTTACCGCCTGCGACAGCAACAATGATACC
GCAAACTTCTTCAACTGCTACGCGAATGCTGCTGATAATGACGTCTCTGT
GATCTACAACCTGGCCAGCAACGCTGCCAGCTCGGCCACCTCCTTCAGCT
CGGGCATCCAAGCCATCCAGGACACCGAGTACCAGTGCACCAACACAACG
CAGAACAACTACGTCCGGGATACAGCTGCCACCTACGATCTGCTGGACAA
TTGCCTCAAGAATGGAGTGCCCACCACTACCGCCACATCCTCATCAGCCG
CCCCTCAAACTACCTCTACCACAGACGGGGGTTTCCTATTTGGCCTTGCA
AGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGT
CATGACTAGTGCTTGATTCTCACCAATAAAAAACGCCCGCGCAACCGAGC
GTTCTGAACAATCCAGATGAGTCTGAGTCATACTGATCTATCACAGGAGT
CAGCGAGCTCGATATCAATACGCCCGCCTGCCCTCATCGCAGTACTGTGA
TCATAGCATTCGCGACTGAGGCATCAAAACGCATGATGACTGATCGCACG
CGCATCAGACCTGGCCTGCCTATAATTTG
UFO02562.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5770-RA | 910 | CG5770-RA | 22..666 | 3..647 | 3210 | 99.8 | Plus |
| CG5767-RA | 854 | CG5767-RA | 41..617 | 7..577 | 1335 | 82.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18044619..18044940 | 381..60 | 1610 | 100 | Minus |
| 2R | 25286936 | 2R | 18044290..18044556 | 647..381 | 1335 | 100 | Minus |
| 2R | 25286936 | 2R | 18047002..18047300 | 379..81 | 670 | 81.6 | Minus |
| 2R | 25286936 | 2R | 18046623..18046811 | 577..389 | 540 | 85.7 | Minus |
| 2R | 25286936 | 2R | 18044995..18045052 | 60..3 | 275 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:04 has no hits.
UFO02562.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:51 Download gff for
UFO02562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5770-RA | 7..653 | 1..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:13 Download gff for
UFO02562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5770-RA | 22..668 | 1..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:23 Download gff for
UFO02562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5770-RA | 20..666 | 1..647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:23 Download gff for
UFO02562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18044290..18044556 | 381..647 | 100 | <- | Minus |
| 2R | 18044620..18044940 | 60..380 | 100 | <- | Minus |
| 2R | 18044996..18045053 | 1..59 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:13 Download gff for
UFO02562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13931795..13932061 | 381..647 | 100 | <- | Minus |
| arm_2R | 13932125..13932445 | 60..380 | 100 | <- | Minus |
| arm_2R | 13932501..13932558 | 1..59 | 96 | | Minus |
