UFO02565.5prime Sequence
1066 bp (966 high quality bases) assembled on 2009-01-14
> UFO02565.5prime
CAGTCGACATGTGCCGCTGCTGTCAAAACTGCTGGGAAGATTTCTACTGG
AATTGCTTCGAGGAGCGTTTCTGCTACGACGAATCCATCGCCAACTACAA
TCCCGAGGAGGACGAGGACTACTTGGCGTCCAGGAAAAATGGCCAGATCA
TTGGACGCATACAACCGACATCGGTGGATAATAATAATTCGCTGACGGTG
CCCCAACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTT
GGGCCTGAGCCTAATGAGCGCCAAGATCCACGAGGAGGACTATCGTCGGG
AGACACAGATCAATGTGCCCAACCTGGGACCGGAGATACTGGCGGTTTTT
GCCAATTCGCAAATCTTCCAGGACCATCAGCCCACCAAGCTGAACCGGAT
CAGCACCAAGACCTATCTGGCCGGAATCCATTCGCCGAATCGCGAAATGC
CGACAACTCCGCGGCTCAGCGATCAGGATCGATTGCTGCGACGTCTGGAA
GGTAATGATGGCCCCAGTGGTGCACACACCCCACTTTTGGGTGGTGCTGC
TAATGGTAAAAGCAGCGGCAAGAGCACCCGCAGCAGCAGCATCGTATCCA
GCGGTGTGCCCAAGGTCAAGTTCTATCTGAACGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCACAGGAGTCCAAGC
GAGCTCGATATCAAATTACGCCCGCCCTGCCACTCATCGCAGTACTGTGT
ATTCATTAGCATTCTGCGACATGAGCCATCACAAACGCATGATGACTGAT
CGCAGCGCATCAGCACTGTCGCTGGCGTATATATTTGCCATGTGAAACCG
GGGGGAGAGTTGTCATATTGCCACGTTTAATCAACTGGTGACTCACCAGA
ATGGCTGAACGAAACC
UFO02565.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17834-RF | 1331 | CG17834-RF | 370..993 | 9..632 | 3120 | 100 | Plus |
| CG17834-RD | 1164 | CG17834-RD | 203..826 | 9..632 | 3120 | 100 | Plus |
| CG17834-RB | 1236 | CG17834-RB | 275..898 | 9..632 | 3120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8537229..8537594 | 267..632 | 1830 | 100 | Plus |
| 2L | 23513712 | 2L | 8536893..8537071 | 90..268 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 8536207..8536268 | 29..90 | 310 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:15:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..6809 | 558..593 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6767 | 558..593 | 117 | 80.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6788 | 558..593 | 117 | 80.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1107..1148 | 552..593 | 111 | 73.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2330..2367 | 556..593 | 109 | 76.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..2858 | 558..595 | 109 | 76.3 | Plus |
UFO02565.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:07 Download gff for
UFO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17834-RD | 185..819 | 1..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:08:55 Download gff for
UFO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17834-RB | 268..902 | 1..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:13 Download gff for
UFO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17834-RB | 268..902 | 1..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:13 Download gff for
UFO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8536207..8536268 | 29..90 | 100 | -> | Plus |
| 2L | 8536894..8537071 | 91..268 | 100 | -> | Plus |
| 2L | 8537231..8537598 | 269..636 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:08:55 Download gff for
UFO02565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8536207..8536268 | 29..90 | 100 | -> | Plus |
| arm_2L | 8536894..8537071 | 91..268 | 100 | -> | Plus |
| arm_2L | 8537231..8537598 | 269..636 | 99 | == | Plus |
