UFO02567.5prime Sequence
1040 bp (929 high quality bases) assembled on 2009-01-14
> UFO02567.5prime
CAGTCGACATGAAGACTTTCCTGATTTTGGCAATCTTTGCTCTAGCCGCT
TCGGCTTATGCTCTGGAGGAATCCGAGCGCGTCAACGGGGAGAACGGCTG
GTACGTTCCCCAGCAGGACGGCTCCTTTGAGTGGGTGGACATGGATGTCG
CTGAGGAGTGGATGGAGGCCCAGGAGAAGCTTGAGGGCCGTGGCTTGACC
ACCGTTCCCGTGAACTTCTACCTCTTCACGCCCAAGAACCCCTCGAGCAG
CAAGCACATCTACGCCACTACCAAGTCCATTTCCAAGTCCAACTTCAACC
CTGCTCACCCCACCCGTTTCGTGATCCACGGCTGGACCCAGAGCTACTTG
AACAGCATGAACTCGGACATCCGCAAGGCATTCCTCTCTAAGGGAGACTA
CAACGTGATCGTTGTTGACTGGGCCCGTGCCCGTTCCGTGGATTATGCCA
CCTCTGTTATGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCAAGATGATT
AACTTCCTGAAGGACAACCACGGTCTGAATCTTAATGACGTATATGTGAT
TGGTCACAGCTTGGGCGCCCATGTGGCTGGATATGCCGGCAAGAACACCG
ACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGCCCCTCTTC
AGCTACAACAAGCCCAACAAACGTCTGAATTCCGACGATGCCTGGTATGT
GGAGTCTATCCAGACCAACGGTGGCACTCTGGGATTCCTGAAGCCCATCG
GCAAGGGAGCTTTCTATCCCAACGGAGGAAAGACCCAGCCCGGCTGCCCT
CTGGATGTGACTGGAGCCTGCTCCCACGGACGCTCACAACCTACTACGCC
GAGGCCGTCTCGAGACACTTCGACCATGAGTGCGAGACTACGAGAGCGTG
CAGAGTGCGAGCACTACTCAGCGTCGCATGGACTGATCACGCTACTGTCG
AGGGTGACTTCTATTGTGCCGTGAACGCAGCTCCCTCCGCATGATACGCA
GCCTTTAACATCGTTGGCCGCGGGCCAGGTATGCTATTAT
UFO02567.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6271-RA | 1072 | CG6271-RA | 22..1040 | 9..995 | 4280 | 96.5 | Plus |
CG6277-RA | 1085 | CG6277-RA | 31..924 | 9..894 | 2600 | 86.6 | Plus |
CG6283-RA | 1083 | CG6283-RA | 319..871 | 311..859 | 840 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27025165..27025979 | 861..48 | 4010 | 99.8 | Minus |
3R | 32079331 | 3R | 27022272..27023067 | 861..67 | 2415 | 87.2 | Minus |
3R | 32079331 | 3R | 27020450..27021002 | 859..311 | 790 | 77 | Minus |
3R | 32079331 | 3R | 27006123..27006439 | 858..546 | 690 | 82.6 | Minus |
3R | 32079331 | 3R | 27017480..27017623 | 767..624 | 225 | 77.1 | Minus |
3R | 32079331 | 3R | 27026049..27026088 | 48..9 | 200 | 100 | Minus |
3R | 32079331 | 3R | 27019251..27019307 | 446..390 | 195 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:13:59 has no hits.
UFO02567.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:17:00 Download gff for
UFO02567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 13..866 | 9..861 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:10 Download gff for
UFO02567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 22..875 | 9..861 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:03 Download gff for
UFO02567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6271-RA | 22..875 | 9..861 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:03 Download gff for
UFO02567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27022272..27022292 | 841..861 | 100 | -> | Minus |
3R | 27025186..27025978 | 49..840 | 99 | <- | Minus |
3R | 27026049..27026088 | 9..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:10 Download gff for
UFO02567.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22847994..22848014 | 841..861 | 100 | -> | Minus |
arm_3R | 22850908..22851700 | 49..840 | 99 | <- | Minus |
arm_3R | 22851771..22851810 | 9..48 | 100 | | Minus |