UFO02570.5prime Sequence
1096 bp (992 high quality bases) assembled on 2009-01-14
> UFO02570.5prime
CAGTCGACATGTTGCCGATTGCACGTGGAATTTACATTGGACTGGTCAAC
ATTACCCGGAATAGCCGGGGAGCTCTTCACACGGCCAGCGCCTTGAGATG
CAAGGCGGAGACTTCGACTGAAGAAAATAATGCGGCTGCCACCGAAGGCG
AAGGCGAGGATAACGCTAGTGGTTCCGCACCAGACCCGAAGGATCGCAGC
AAACCAATCCCAGTGGAGACCTCGATTCGATACTTAAAGAGCGCCGCTTA
CAAGCAAACCTACGGCGAGGACTTTGTGTGGACGCAGTATCGGCGCAACC
ACAAGGGCATGTATGCGCCGCGCAAAACACGAAAGACGTGCATCCGCCAG
AACCGTATCAGCACCGGAAATCCCTGTCCCATTTGCCGTGATGAATACCT
GGTGCTGGACTACCGCAACACGGAGCTCCTGGAGCAGTTCATATCGCCCC
ACAGCGGAGACGTCCTTAGCTACTCAAAGACAGGCCTGTGTCAAAAGAGC
CACCTGCGTCTAATGGTCGCCGTTCAGCAAGCCCGCGACTCCGGGTACCT
AACATACGATGTGCCCTTCAGGGAGTATGATTACAGCGAGTACTACGGCC
AGGAGCAGAAGCAGAAAGCTGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCACTCATCGCAGTACTGTTGTATTCATTAGC
ATTCTGCGACATGAGCCATCACAAACGCATGATGACCTGATCGCAGCGCA
TCAGCACCTGTCGCTTGCGTATATATTTGCCATGTGAAACGGGGCGAGGA
GGTGTCCATATTGCACGGTCATCAACTGTGACTCACCAGGGAATGCTGAA
ACGAAAACATATCTCATACCTTTAGGATAGCAGGTTAACGTACCGC
UFO02570.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS18B-RB | 761 | CG10757-RB | 105..716 | 9..620 | 3060 | 100 | Plus |
| mRpS18B-RA | 863 | CG10757-RA | 105..716 | 9..620 | 3060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20096476..20096804 | 620..292 | 1645 | 100 | Minus |
| 2L | 23513712 | 2L | 20096865..20097149 | 293..9 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:30 has no hits.
UFO02570.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:53 Download gff for
UFO02570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS18B-RB | 90..712 | 1..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:42 Download gff for
UFO02570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS18B-RA | 97..719 | 1..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:55 Download gff for
UFO02570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS18B-RA | 97..719 | 1..624 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:55 Download gff for
UFO02570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20096866..20097157 | 1..292 | 98 | | Minus |
| 2L | 20096473..20096803 | 293..624 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:42 Download gff for
UFO02570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20096473..20096803 | 293..624 | 99 | <- | Minus |
| arm_2L | 20096866..20097157 | 1..292 | 98 | | Minus |
