UFO02572.5prime Sequence
1098 bp (980 high quality bases) assembled on 2009-01-14
> UFO02572.5prime
CAGTCGACATGGGAAGTTTTCCAGCTCTACTTGTTGTTGTCGGCTCGCTG
GCATTGGGCGCGAATGCTCAACTCCCGCCCATCAATTGTGTTGCAAAAAT
TCCGAGTGGCCGTGTCACCGGTCACTGCATTTCGATCCGGGAGTGTGACT
ACTTCATGAGAATCCTGCTATCCGGCAATCTCAGCCAGAGCGATCGCAAC
CTGCTCCGTGATAATCAGTGCGGAGTGCGGGGCAACGACGTCCAGGTATG
CTGTCCTAGTACCGCCGGCTTGGGTGCCCTGACCCACCCACTTTTGCCCT
CGGATTGCGGAAAGGTTCGTTGGCAGCGTTCGAATGACACAGATACGCGA
ATCCGGGAGTTTCCCTGGCTGGCCCTCATTGAGTATACGCGCGGCAACCA
GGAGAAGATCCATGCGTGTGGCGGTGTGCTTATCAGTGATCGGTATGTGC
TAACTGCTGCCCATTGTGTGGCCCAGGCGGCGACTAGCAATCTGCAGATT
ACTGCTGTCCGGTTGGGTGAATGGGACACTAGCACGAATCCCGACTGTCA
GTACCATGAGGATAGTAAAGTGGCGGATTGCGCGCCTCCCTACCAGGACA
TAGCCATCGAGGAGTTGCTTCCACATCCGCTCTACAATCGCACCGACAGG
ACGCAGATCAACGACATTGCCCTCGTCCGACTGGCAAGTCCTGCCAAGCT
CAACGACTTTGTGCAACCCATTTGCCTGCCCAACAAGCAGCTGCGAGCGG
ACGAGCTGGAGGACCTGGTCACCGAGGTGGCCGGATGGCAGGCTAGTTCC
TCGCAAAGGATGCGAAAAGGTTATGTGACCATTAGTTCGATTGAGAGTGT
CAAAGGAAGTACGCCAGCCAGCAGTTGCGCATCCAAGCCTCGAAGCTCTG
TGGCCTGACCATTCCCAGAGTGCTACGGCAACGCTGGTGGACCACTGATG
CTGTCAGACGATGGCTATCTGCTCGGTGACTGTGTCGTCGGACCGTCCCT
GCCCATCCCGACTGGACGGATGTCTACACAGGTGGGCGTCTTACATCGAT
GATTCACGGACAATCTCAGCCAGCACAGCCTTCTAAACATTCGTTGGC
UFO02572.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3505-RA | 1185 | CG3505-RA | 51..1126 | 8..1068 | 4905 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14658479..14659070 | 393..978 | 2685 | 98.5 | Plus |
| 3R | 32079331 | 3R | 14657643..14657824 | 66..247 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 14658258..14658408 | 244..394 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 14657497..14657555 | 8..66 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:14:37 has no hits.
UFO02572.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:18:53 Download gff for
UFO02572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3505-RA | 19..1083 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:39 Download gff for
UFO02572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3505-RA | 33..1097 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:28 Download gff for
UFO02572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3505-RA | 43..1107 | 1..1050 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:28 Download gff for
UFO02572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14657489..14657555 | 1..66 | 95 | -> | Plus |
| 3R | 14657644..14657822 | 67..245 | 100 | -> | Plus |
| 3R | 14658260..14658407 | 246..393 | 100 | -> | Plus |
| 3R | 14658480..14659137 | 394..1037 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:39 Download gff for
UFO02572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10483211..10483277 | 1..66 | 95 | -> | Plus |
| arm_3R | 10483366..10483544 | 67..245 | 100 | -> | Plus |
| arm_3R | 10483982..10484129 | 246..393 | 100 | -> | Plus |
| arm_3R | 10484202..10484859 | 394..1037 | 97 | -> | Plus |
