UFO02573.5prime Sequence
866 bp (739 high quality bases) assembled on 2009-01-14
> UFO02573.5prime
CAGTCGACATGAAGTTCCTGATCATCCTTGCCCTGGCTGTGGCCGCCTCC
GCTTTCCCCGAGCCGGAGCTGCGCCATCGCAGCCGCGAGATGCCCGTCGT
TGGCGACATTGGAGGTCGCATCACCGGAGGAAGCAACGCCGCCGTCGGCC
AGTTCCCCTACCAGGTGGGACTTTCCCTGAAGCTGAGTGCTCTGTCCAGC
GCCTGGTGCGGTGGTTCTCTGATCGGCAGCACCTGGGTCCTGACCGCTGC
TCACTGTACCGATGGAGTTCAGTCCGTGACCGTCTACTTGGGCGCCACCG
TGCGCACCTCCGCCGAGATCACCCACACCGTGTCCAGCTCCGACATCATC
ATCCACTCCGGCTGGAACAGCGCTAACCTGCGCAACGACATCTCCCTGAT
CAAGATCCCCGCCACCTCCTCCAGCAGCAGGATCTCCGCCGTCAAGCTGC
CAAGCATCTCCAACTCCTACTCGACCTTCGTCGGTGACGTCGCTGTCGCC
TCCGGATGGGGACGCACCAGTGACACCTCCAGTGGTGTGGCTACCAATCT
TCAGTATGTCGACCTGACTGTGATCACCAACACCAAGTGCGCCCAAACCT
ACGGCACCTCGGTCGTGACCGACTCAACCCTCTGCGGGGCCACCACCGAC
GCCAAGTCCACCTGCAACGGTGACCTCCGGCGGTCCTCTGGTCCTCAGTC
GTCAGCGAGCAGATCGGTCTGACCTCATTCGGTGCCTCTGCGTTGCGAGA
AGGCTACCCCGCTGCCTTCACTCGTGTGACAGCTACTGAACTGATCAGAC
TAACACTGGCATCGCAGCTTCTAGAACATTCGTTTGGCCGCGGCCAGTAT
GGCTAATCTAATCTAT
UFO02573.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon65Aiv-RA | 904 | CG6467-RA | 42..854 | 9..813 | 3800 | 98.5 | Plus |
| Jon99Ciii-RB | 1240 | CG31362-RB | 210..407 | 204..401 | 240 | 76 | Plus |
| Jon99Ciii-RA | 837 | CG31362-RA | 210..407 | 204..401 | 240 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6039529..6040048 | 265..780 | 2325 | 98.7 | Plus |
| 3L | 28110227 | 3L | 6039196..6039452 | 9..265 | 1285 | 100 | Plus |
| 3R | 32079331 | 3R | 29922425..29922622 | 204..401 | 210 | 73.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:54 has no hits.
UFO02573.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:09 Download gff for
UFO02573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon65Aiv-RA | 40..855 | 9..817 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:58 Download gff for
UFO02573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon65Aiv-RA | 42..857 | 9..817 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:51 Download gff for
UFO02573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon65Aiv-RA | 42..857 | 9..817 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:51 Download gff for
UFO02573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6039196..6039452 | 9..265 | 100 | -> | Plus |
| 3L | 6039530..6040088 | 266..817 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:58 Download gff for
UFO02573.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6032296..6032552 | 9..265 | 100 | -> | Plus |
| arm_3L | 6032630..6033188 | 266..817 | 97 | | Plus |
