UFO02574.5prime Sequence
1001 bp (895 high quality bases) assembled on 2009-01-14
> UFO02574.5prime
CAGTCGACATGAGATTGGTCATCTTGGAAACCAGCGACTCGGTGGGCAAG
TGGGCGGCCAAATATGTGATGAAACGCATCAATGACTTTCAGCCGAGTGC
CGACAGATACTTCGTTTTGGGCCTGCCCACGGGATCTACGCCATTGGGAA
TGTACAAAGAACTGATCGAGTTTCATAAGCAGGGCAAGGTATCCTTTCAG
TATGTGAAAACCTTCAATATGGATGAGTATGTGGGACTGGCCAGAGATCA
CCATGAGAGCTATCACTACTTCATGTGGAACAACTTCTTCAAGCACATCG
ACATTGAGCCCAAGAATGTGCACATTTTGGATGGCAATGCAGCTGATCTG
GTGGCCGAGTGCAATAAGTTCGAGGATCAGATCCGCGAGGCTGGAGGAGT
GGAGCTGTTCATCGGTGGCATCGGACCCGATGGCCATATTGCCTTCAATG
AGCCCGGCTCCTCATTGGTGTCCCGAACGCGGGTGAAAACTCTGGCGCAG
GATACACTTGAAGCGAATGCCCGTTTCTTTGACAACGATATGAGCAAGGT
GCCCAAACAGGCTTTAACCGTGAGCGTTGGCACTGTGATGGACTCCAAGG
AGGTGATGATCCTCATCACCGGAGCTCACAAGGCATTTGCCCTGTACAAG
GCCATCGAGGAGGGTGTGAATCACATGTGGACCGTCAGTGCCTTCCAGCA
GCATGCAAATACCCTGATGATCTGCGACGAGGATGCCACTTTGGAGCTGA
GAGTTAAGACCGTTAATATTTCAAGGGCATTCTCAGAGATCTAGACGACG
CTCCCCACTGGAGGGCTACAAAACGCAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAGTGTCATATCATATCATAATCATATCATATCACAC
TAGCTAGGAGATCTGTCATGACTAGTGCTGATTCTCCCCAATAAAAACGC
GGCGGCACGAGCGTCTGACCATTCGATGGAATCTGAGGTCATACTGAATC
T
UFO02574.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oscillin-RH | 1299 | CG6957-RH | 218..1034 | 9..823 | 4005 | 99.5 | Plus |
| Oscillin-RF | 1388 | CG6957-RF | 218..1034 | 9..823 | 4005 | 99.5 | Plus |
| Oscillin-RC | 1206 | CG6957-RC | 208..1024 | 9..823 | 4005 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5548167..5548710 | 234..776 | 2655 | 99.6 | Plus |
| 2L | 23513712 | 2L | 5547971..5548101 | 105..235 | 655 | 100 | Plus |
| 2L | 23513712 | 2L | 5547815..5547912 | 9..106 | 490 | 100 | Plus |
| 2L | 23513712 | 2L | 5549015..5549065 | 774..823 | 190 | 96.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:18 has no hits.
UFO02574.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:08 Download gff for
UFO02574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oscillin-RB | 546..1372 | 1..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:30 Download gff for
UFO02574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oscillin-RC | 208..1024 | 9..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:22 Download gff for
UFO02574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oscillin-RC | 208..1024 | 9..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:22 Download gff for
UFO02574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5547805..5547912 | 1..106 | 96 | -> | Plus |
| 2L | 5547973..5548100 | 107..234 | 100 | -> | Plus |
| 2L | 5548168..5548709 | 235..775 | 99 | -> | Plus |
| 2L | 5549017..5549065 | 776..823 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:30 Download gff for
UFO02574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5547805..5547912 | 1..106 | 96 | -> | Plus |
| arm_2L | 5547973..5548100 | 107..234 | 100 | -> | Plus |
| arm_2L | 5548168..5548709 | 235..775 | 99 | -> | Plus |
| arm_2L | 5549017..5549065 | 776..823 | 95 | == | Plus |
