UFO02578.5prime Sequence
975 bp (853 high quality bases) assembled on 2009-01-14
> UFO02578.5prime
CAGTCGACATGTCGTACAAGGTGGAACCATTGCCCGATTCCTACGCCGGC
CTGGGCGAGGGTCCCCATTGGGATGTGGCCAGGCAAAGCCTGTACTACGT
GGATTTGGAGGCGGGCAGCCTGCTCCGCTACGACTATGCCCAGAACAAGG
TCTACAAGACGAAGATCGAGGGCGAAACCTTGGCCGGATTCGTGCTGCCG
GTGGAGGGACGTCCGCAGGAGTTCGCCGTCGGCTGCGGTCGACGCGTGGT
GATCGTCAACTGGGATGGCGTCTCGCCCAGCGCCAAGGTGGTGCGCACAC
TGTTCGAGGTGCAGCCACTGATGGAGAAGAATCGTTTGAACGACGCCAAG
GTTGATCCCCGTGGTCGCTTCTTTGGCGGCACCATGCGCTACATTGGCGA
TGAGTTCGAGTTCCGTCACGGCGAGCTGTACCGCTGGGAGGCCGGTGGCC
AGGTGTCGGTGATCAAGGGCGATGTGGGCATCTCCAATGGACTGGCATGG
GACGAGAAGGCCAAGAAGTTCTACTACATCGATACCACCGACTACGAGGT
GAAGTCGTATGACTATGATTTCGAGACCGGCGTGGCTAGCAATCCCAAGG
TTATATTCAATCTGCGCAAGAACAGTCCCAAGGATCATCTGCTGCCCGAT
GGCCTGACCATCGATACCGAGGGCAACCTGTATGTGGCCACCTTCAATGG
CGCCACCATCTACAAGTTAATCCCAACACTGGCAAGATTCTGCTTGAGAT
CAAGTTCCCAACCAAACAGATTACCTCCGCCGCCTTCGTGCCCCAACTTG
ACATCCTGTACGTGACCACTGCCGCAAGTTCGATCAGCCCGCTCCAGCTG
CACCACCTACAGGTGACGACTGACGCCACCGCTATCCCGGCGTCACTGAG
TCCCAGCTTTCTAGACATTCGTTGGCGCGCGCCAGTTATGGCTATCTAAT
CTATCTAACTTACTCCAACTAGCTA
UFO02578.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| regucalcin-RD | 1083 | CG1803-RD | 85..982 | 9..895 | 4135 | 98.1 | Plus |
| regucalcin-RB | 1458 | CG1803-RB | 143..1040 | 9..895 | 4135 | 98.1 | Plus |
| regucalcin-RC | 1097 | CG1803-RC | 99..996 | 9..895 | 4135 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12016003..12016721 | 9..726 | 3455 | 99 | Plus |
| X | 23542271 | X | 12016779..12016918 | 727..861 | 470 | 95.7 | Plus |
| 3R | 32079331 | 3R | 14746418..14747125 | 716..9 | 420 | 70.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:14:17 has no hits.
UFO02578.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:05 Download gff for
UFO02578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| regucalcin-RB | 121..1024 | 9..899 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:55 Download gff for
UFO02578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| regucalcin-RC | 99..1002 | 9..899 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:08 Download gff for
UFO02578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| regucalcin-RC | 99..1002 | 9..899 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:08 Download gff for
UFO02578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12015997..12016721 | 1..726 | 98 | -> | Plus |
| X | 12016779..12016963 | 727..899 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:55 Download gff for
UFO02578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11910030..11910754 | 1..726 | 98 | -> | Plus |
| arm_X | 11910812..11910996 | 727..899 | 93 | | Plus |
