UFO02579.5prime Sequence
1088 bp (971 high quality bases) assembled on 2009-01-14
> UFO02579.5prime
CAGTCGACATGACGGCGAACATAACGAAGAGTCCGCGCCCGCTGAAAATA
ACCATCGTGGGCGATGGCATGGTGGGCAAAACCTGCATGCTGATAACCTA
CACACGGAACGAGTTCCCCGAGGAGTACATACCCACAGTGTTCGACAATC
ACGCCTGCAACATAGCCGTAGATGATCGGGACTACAATCTGACCCTCTGG
GACACTGCCGGCCAGGAGGATTACGAAAGGCTGCGCCCCCTGAGCTATCC
CAGTACCAACTGCTTCCTGTTGTGCTATTCGATCAGCAGTAGGACCTCAT
TCGAAAACGTGAAAAGCAAGTGGTGGCCGGAGATCCGTCACTTCTCCGCC
CACGTTCCCGTGGTTCTCGTGGGCACCAAACTGGACTTGCGCATTCCCAA
CTCGGAGAAGTTCGTGACCACACAGGAGGGAAAAAAGATGCGCAAAGAGA
TACACGCATTCAACTTGGTCGAGTGCTCCGCCAAGAAGAAGCAGAACCTG
CAGCAGGTCTTCGAGGAGGCGGTTAGAGCCGTGGAGAGGAAACCAAAGAC
GACGTCCAAGCAATCGTGCAAAATACTGGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAG
CTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTA
ATTCATTAAGCATTCTGCCGACATGAAGCCATCACAAACGGCATGATGAA
CCTGATCGCAGCGCATCAGCACTTGTCGCTTGCGTATATATTTGCCCATG
TGAAACGGGGCGAAGAAGTGTCATATTGCAGTTTAATCAAACTGGTGAAC
TCACCCAGGATGCTGAACGAAAAAACATATTTCTCATAACCCTTAGAAAT
AGCAGTTTCACGTAAACGCAATCTGCAAATTGTGTGAA
UFO02579.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoL-RB | 1205 | CG9366-RB | 317..886 | 9..578 | 2850 | 100 | Plus |
| RhoL-RA | 1041 | CG9366-RA | 247..816 | 9..578 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9497880..9498125 | 254..9 | 1230 | 100 | Minus |
| 3R | 32079331 | 3R | 9497631..9497802 | 426..255 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 9497420..9497575 | 578..423 | 780 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:50:31 has no hits.
UFO02579.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:04 Download gff for
UFO02579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoL-RA | 237..818 | 1..585 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:10 Download gff for
UFO02579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoL-RA | 241..822 | 1..585 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:09 Download gff for
UFO02579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoL-RA | 241..822 | 1..585 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:09 Download gff for
UFO02579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9497414..9497572 | 426..585 | 98 | <- | Minus |
| 3R | 9497632..9497802 | 255..425 | 100 | <- | Minus |
| 3R | 9497880..9498130 | 1..254 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:10 Download gff for
UFO02579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5323136..5323294 | 426..585 | 98 | <- | Minus |
| arm_3R | 5323354..5323524 | 255..425 | 100 | <- | Minus |
| arm_3R | 5323602..5323852 | 1..254 | 98 | | Minus |
