UFO02582.5prime Sequence
1124 bp (1016 high quality bases) assembled on 2009-01-14
> UFO02582.5prime
CAGTCGACATGGCGCCGAATGCAGCAGTACCAGTGGAGCGATATGAGCCT
GAGAACATCGGGATCAACGCCATTCTCCTGGGGCCGCCGGGTTCCGGCAA
AGGAACGCAGGCTCCCCTGCTGAAGGAGAAGTTCTGCGTGTGCCACCTGT
CGACCGGCGACATGCTGCGGGCGGAGATTTCATCCGGTTCGAAGCTGGGA
GCCGAGTTGAAGAAGGTCATGGATGCCGGCAAACTGGTCTCCGACGACCT
GGTCGTGGACATGATCGACTCCAACCTGGACAAGCCCGAGTGCAAGAACG
GATTCCTCCTGGACGGATTCCCCAGGACTGTCGTTCAAGCTGAGAAGCTC
GACACATTGCTGGACAAGAGGAAAACCAACTTGGATGCTGTCATCGAGTT
TGCCATCGACGACAGTCTGTTGGTGAGGCGCATCACTGGCCGCTTGATCC
ACCAGGCCAGCGGGCGTTCGTATCACGAAGAGTTTGCCCCTCCAAAGAAG
CCAATGACGGACGATGTCACTGGAGAGCCCCTAATCCGTCGCAGCGATGA
CAACGCCGAGGCTCTGAAGAAGCGACTGGAAGCATATCACAAGCAGACAA
AGCCGCTGGTCGACTACTACGGCCTGAGGGGTCTGCACTTCAAGGTGGAC
GCCGCCAAGAAGTCCAGCGACGTCTTCTCCACCATCGACTCTATATTCCA
ACGCAAGCGTCCTGCCCAGATCCAGTTAGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGGTCATTACTGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCGCCTGCACTCATCGCAGTACTGTTGTATCATA
GCATTCTGCGACATGGAAGCCATCCAAACGGCATGAATGAACCTGAATCG
CCAGCGGCATCAGCACTGTTCGCCTTGCGTTTAATATTTTGCATGGGTGA
ACGGGGGCGAGAAGAGTGTCTAAA
UFO02582.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adk2-RA | 1065 | CG3140-RA | 113..832 | 9..728 | 3585 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24024897..24025136 | 108..347 | 1185 | 99.6 | Plus |
| 2R | 25286936 | 2R | 24025432..24025644 | 516..728 | 1065 | 100 | Plus |
| 2R | 25286936 | 2R | 24025198..24025369 | 346..517 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 24024319..24024421 | 9..111 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:01 has no hits.
UFO02582.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:12 Download gff for
UFO02582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adk2-RA | 113..841 | 1..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:02 Download gff for
UFO02582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adk2-RA | 104..832 | 1..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:56 Download gff for
UFO02582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adk2-RA | 104..832 | 1..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:56 Download gff for
UFO02582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24024310..24024420 | 1..110 | 96 | -> | Plus |
| 2R | 24024900..24025136 | 111..347 | 99 | -> | Plus |
| 2R | 24025200..24025367 | 348..515 | 100 | -> | Plus |
| 2R | 24025432..24025644 | 516..728 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:02 Download gff for
UFO02582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19912955..19913167 | 516..728 | 100 | == | Plus |
| arm_2R | 19912423..19912659 | 111..347 | 99 | -> | Plus |
| arm_2R | 19911833..19911943 | 1..110 | 96 | -> | Plus |
| arm_2R | 19912723..19912890 | 348..515 | 100 | -> | Plus |
